Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq2 96.9 3e-15 seq6 91.5 1e-13 seq1 82.4 6e-11 >seq5 Length=20131956 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | || || ||| ||| || || || ||||| |||| | Sbjct 16284233 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 16284174 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | |||| || | ||| || |||||||| ||||| ||||| || |||| |||| Sbjct 16284173 AGGGTCCTGCCGTCCTCGAGCTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 16284114 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | || || | ||||||| Sbjct 16284113 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACATTGTCAATGGTATCGGAGGACTCCACC 16284054 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||| || || ||||| || ||||| Sbjct 16284053 TCAAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 16284007 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || || ||| || || || ||||| || | Sbjct 2692006 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2691947 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| ||||| || || || ||||| || |||| | Sbjct 2691946 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 2691887 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 2691886 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 2691827 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 2691826 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 2691774 >seq2 Length=27082872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| || | || | | |||| |||| |||||| |||||||| Sbjct 2374013 CTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAA 2374072 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||||| ||| | |||||||||||| ||||| || || Sbjct 2374073 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 2374132 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || |||| ||||||||| | || || || || || |||| || || || Sbjct 2374133 ATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGTGTCTTCAC 2374192 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 2374193 AAAGATCTGCATC 2374205 >seq6 Length=21794218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || ||||| || || ||| ||| || || || ||||| |||| Sbjct 19645941 CCTCCCCTGAGCCTCAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 19645882 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || || || || || ||||| || || | |||| Sbjct 19645881 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 19645822 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| ||| || | | | || || | ||||||| Sbjct 19645821 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCAATGGTATCCGAGGACTCCACC 19645762 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | || || ||||||||||||||| Sbjct 19645761 TCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAAATCTGCATC 19645714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || || |||||||| | || | || Sbjct 19646844 AGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGC 19646785 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| ||||| ||||| || |||| ||||| |||||| Sbjct 19646784 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCC 19646725 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 19646724 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAAGGTG 19646665 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 19646664 ATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| ||||| || || || | || || | ||| || |||||||| Sbjct 19269449 CTCCTTCTGGATATTATAATCTGAGAGGAGGCGGCCATCCTCAAGCTGTTTCCCGGCAAA 19269508 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| | ||||| |||| |||||||||||| || || || ||| Sbjct 19269509 GATCAAGCGCTGCTCATCCGGTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATT 19269568 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || ||||| | ||| ||||| | || || ||||| || || | ||| || || Sbjct 19269569 ATCAATAGTATCTGAGGACTCAACCTCAAGGGTGATGGTTTTCCCGGTGAGAGTCTTCAC 19269628 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 19269629 AAAGATCTGCATC 19269641 >seq1 Length=33916305 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || || ||| || || || ||||| || | Sbjct 9799248 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 9799307 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| ||||| || || || ||||| || |||| | Sbjct 9799308 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 9799367 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| || || | | | || || | ||||| Sbjct 9799368 GGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 9799427 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 9799428 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 9799480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380926035091593