Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2451 324 3e-83 seq2254 241 3e-58 seq2396 224 2e-53 seq2357 194 4e-44 seq1582 168 2e-36 seq2092 158 3e-33 seq1850 138 3e-27 seq2339 107 4e-18 seq2127 102 2e-16 seq1992 91.5 3e-13 >seq2451 Length=202 Score = 324 bits (358), Expect = 3e-83 Identities = 193/202 (96%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 187193 TTGTTTCTCCAACCGCTCTAACTATTCTTCAGTCTGCAACTACTTCTAGTTTTGCACGTA 187252 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 TTGTTTCTCCAACTGCTCTAACTATTCTTCAGTCTGCAACTACTTCTAGTTTTGCTCGTA 60 Query 187253 CTACTGAAGGTACTTTTGAAGCTCCAACTAACGTTAAATTCGTTGGTGTTCTAAACTCTA 187312 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 61 CTACTGAAGGTACTTTTGAAGCTCCAACTAACGTTAAATTCGTTGGTGTACTAAACTCAA 120 Query 187313 CTATGCGTGTATACGTTGATACCTATGCTGATGACAGTACTGATGTACTAATCGGTTATA 187372 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 CCATGCGTGTATATGTTGATACCTATGCTGATGACAGTACTGATGTACTAATCGGTTACA 180 Query 187373 AAGGTAACCAAGAGACTGATGC 187394 ||||||| ||||| |||||||| Sbjct 181 AAGGTAATCAAGAAACTGATGC 202 >seq2254 Length=218 Score = 241 bits (266), Expect = 3e-58 Identities = 174/200 (87%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 17991 AGTACTGGCATAATACTTACATGGATTAGGGAATGGCCTTAATCATTTTAAGCGAGAATA 18050 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 202 AGTACTGGCATAATACTTACATGGATTAGGGAATGGCCTTAATCATTT-AAGTGAGAATA 144 Query 18051 CTATCATGAAATTCGAAGAACTGAACGAAGAACAAAAAGCTAGAGCAATTGAAAAACATC 18110 ||||||||||||||||||||||||| ||||||||| |||||| ||||||||| | || Sbjct 143 CTATCATGAAATTCGAAGAACTGAATGAAGAACAACAAGCTAAAGCAATTGAGATTCACA 84 Query 18111 GCGATATCAACGTTGACTATGACGAATGGTATGATTTTGTAAAAGAAGAACATCATTCTA 18170 | ||||| ||||| | | | || ||| |||||||||| ||||||||||||||| | | Sbjct 83 GAGATATTAACGTGGTTCACCAGGACTGGCATGATTTTGTCAAAGAAGAACATCATGCAA 24 Query 18171 AACTGGAAGAAGTTGGTTTT 18190 ||||||||| ||| |||||| Sbjct 23 AACTGGAAGCAGTAGGTTTT 4 >seq2396 Length=206 Score = 224 bits (248), Expect = 2e-53 Identities = 172/204 (84%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 59316 GGTTTATACGCACTTCCTGGTGGTTTCTTTGATGCGTGGAAAGATAAAGACCAAATTCAA 59375 || || || ||| | |||||||||||||| ||||| |||| |||||||| ||||| ||| Sbjct 206 GGATTGTATGCATTACCTGGTGGTTTCTTCGATGCTTGGACTGATAAAGATCAAATCCAA 147 Query 59376 ACTGCACTACGCGAATTGAAAGAAGAAACGAAAATCGATGTTCCACTAAAAGTACTTGAA 59435 || ||| | || || | |||||||||||||| || ||||| ||| | |||||||||||| Sbjct 146 ACAGCATTGCGTGAGCTTAAAGAAGAAACGAAGATTGATGTACCAATGAAAGTACTTGAA 87 Query 59436 GGTTCAATCCGTGAAAGTATGGAATTCGGTGATTTCAATCGTTCCTTACGCTGGCGTATT 59495 ||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 86 GGTTCTATTCGTGAAAGTATGGAATTTGGTGATTTCAATCGTTCACTACGCTGGCGTATT 27 Query 59496 ATCACCAAATGTGCTTACATCCAA 59519 || || || |||||||| |||||| Sbjct 26 ATTACAAACTGTGCTTATATCCAA 3 >seq2357 Length=209 Score = 194 bits (214), Expect = 4e-44 Identities = 167/207 (81%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 82942 GTACAGAACTGTTGGCGATACAAATAGTATCACATGGAGAGCTAAAGTAACTAAAAGTAC 83001 ||| |||||| || ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 209 GTATAGAACTCAAGGTGATACTAATAGTATTACATGGAGAGCTAAAGTAACTAAAAGTAC 150 Query 83002 TGGTCAAATGGATGATTTTGTTGTCGCGAGTACATATCAGGCACATACACCAAATGATGG 83061 | ||||||||||||||||| || | |||||||||| ||||||| |||| | || | Sbjct 149 TCAACAAATGGATGATTTTGTCGTTTCTGGTACATATCAATCACATACTCCAAGTAATAG 90 Query 83062 TCAATTACCAACTGCTGTTCCCGGCGTAGGTTTTGGTTATATTGATTTTTTCCGAAATAG 83121 ||| || || |||||||| || ||||| ||||| |||||||||||| ||||| Sbjct 89 TCAGTTGCCTTGGGCTGTTCCAGGTGTAGGATTTGGATATATTGATTTTGAAAGAAATGC 30 Query 83122 AGAAGATGACCGTGTTCGTATTATTTT 83148 | |||||||||||||||| ||||||| Sbjct 29 GGCAGATGACCGTGTTCGTGTTATTTT 3 >seq1582 Length=314 Score = 168 bits (186), Expect = 2e-36 Identities = 217/298 (73%), Gaps = 1/298 (0%) Strand=Plus/Plus Query 266935 GCTGAATGTATGGGTAAAACCAGTCCAGTACTAAGTCAAATGGCGTTTGCTGAAGACTAT 266994 ||||| |||| ||| ||||||| |||| | || || |||||| |||||||| ||| Sbjct 14 GCTGAGTGTACTGGTCGAACCAGTACAGTGTTGAGCCAGATGGCGAACGCTGAAGATTAT 73 Query 266995 GATCTAGTAATAATGCTTGACATTGACGTTCCTTGGGTGTATGATGCATTGAGGTTGAAT 267054 ||||| ||||||||||||||||||||||| || |||||||||||| |||| | |||| Sbjct 74 GATCTTGTAATAATGCTTGACATTGACGTACCGTGGGTGTATGATCCATTACGTCTGAAC 133 Query 267055 AATACCGATGAGCTTCGCCAAAAAACATTTGAACATTTAAAGTTCCTTTGTAAAGCACAC 267114 || || ||||| || | || ||||||||| | ||||| |||||||||||||| Sbjct 134 AACACAGATGAAAAACGTATTAGTACGTTTGAACATCTGAAGTTTCTTTGTAAAGCACAT 193 Query 267115 GGTGTAAATTACGTTACTGTCAGTGGTGATTTCGATTCCCGTTTTAAAACGGCAGTTGAA 267174 ||||| || || | || |||||| | || |||| |||||| | | | Sbjct 194 GGTGTCAAGTATCATTTAGTTAGTGGTACATATGACGAACGTTATAAAACTTCTATCCAG 253 Query 267175 CTCGTACAAAATCTATTACAAGGTAATAACAAATGAATGCATTGGTCACAAGTTTGAA 267232 | ||| | || || |||||||||| | | |||||||||| || | || |||||||| Sbjct 254 TTGGTAAAGAACTTACTACAAGGTAA-ATCCAATGAATGCACTGATAACTAGTTTGAA 310 >seq2092 Length=234 Score = 158 bits (174), Expect = 3e-33 Identities = 178/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 18466 AAAGGAAATTGATGAATATATCACACGTGCAGGTCAAGAGTACTATCGCGATCTGAATAC 18525 ||||||||||||| |||||||| | |||||||| || ||||| | |||||| Sbjct 234 AAAGGAAATTGATACTTATATCACGCAAGCAGGTCAGATCTATTATCGTGCACTGAATGA 175 Query 18526 TGCATATGATGATTTAACTTCTGACGAACAAGTTAAACTATCAATCATTGCAAATGATAT 18585 ||||| || ||| | || ||||||||||||||||| | | ||||||||||||||||| Sbjct 174 AGCATACGACGATCTTACCAGTGACGAACAAGTTAAACAAACTATCATTGCAAATGATAT 115 Query 18586 GGACTTTGAAGAAGACCCACGTGAATCAGGCATAACTTATCTTTGACAAGTACTCAAAGG 18645 ||| ||||||||||| | ||| | || |||||||||| | | || ||| |||| | Sbjct 114 GGAATTTGAAGAAGATATGCATGATCCTTGCGTAACTTATCTGTAATAA-TACACAAAAG 56 Query 18646 GGATTGACTAGTTCAATCCCTTTGTTGTATAATAACAATACGGAGACAATAGAATG 18701 |||||||| |||||||||| || || || | || || ||| | ||| |||||| Sbjct 55 GGATTGACACGTTCAATCCC-TTATTATAAACTATCAGTACTTAAACAGGAGAATG 1 >seq1850 Length=262 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 10853 AATGAGTCGCAGTACTGAAATAGCTCTGTTTATCTTTGTACTAGTAGCACTATCTATTAA 10912 ||||||||| | | ||| | | ||||||||||||| | || || | ||| | Sbjct 34 AATGAGTCGTAAAAAAGAATTGTGTTTGTTTATCTTTGTTGTTATAATGCTTTGTATAGA 93 Query 10913 TTTTAATTGAGAGGATTCAAAATGTCTTTATATGATGTAACTGTAAACAGTACTGGTATT 10972 |||||||||||||| |||||||| | ||||||||||| | ||||||||||||||| Sbjct 94 CTTTAATTGAGAGGAAAGAAAATGTCACTTTATGATGTAACAATTAACAGTACTGGTATT 153 Query 10973 GGTCGTTCTGGTACTACTAAGATGCTGGCTGTTGCTTTCTTTCCTCATATGAATGAAGCA 11032 |||||| | |||||||| |||||||||| || | ||||| || ||||| ||| ||| Sbjct 154 GGTCGTGCGGGTACTACAAAGATGCTGGTGGTCGGATTCTTCCCGCATATCTCTGATGCA 213 Query 11033 AGACAAGGTATCAATGAGTGGGTATCAGAGAACTTT 11068 ||| | |||| ||||||||| | || || ||| Sbjct 214 AGAGAGAAGATCACGGAGTGGGTAGCGGAAAAATTT 249 >seq2339 Length=210 Score = 107 bits (118), Expect = 4e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 45617 AAATGGTTGACTGGTATACAGGAAAATCATTGAAAGATGTATTTGATTTTCTTATGGAGC 45676 ||||||| || ||||||||||| | |||| ||||||| ||| | ||||| ||||||| Sbjct 1 AAATGGTAGATTGGTATACAGGTGACACATTAGAAGATGTGTTTAACTTTCTAATGGAGC 60 Query 45677 GGTATGTATGAGTGAACGTGAATTTGGAAAACATCAACG 45715 | ||||||||||||| ||||||||| | ||||||||||| Sbjct 61 GTTATGTATGAGTGAGCGTGAATTTAGTAAACATCAACG 99 >seq2127 Length=230 Score = 102 bits (112), Expect = 2e-16 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 307777 TGGATTCTTGTTTTAATTAAGGTGAGATTAAAAAATGGATAATCAACATAAACAAATTAA 307836 |||| || || ||||||||| ||| || | ||||| |||||||| ||||| ||||| Sbjct 127 TGGAATCCAGTATTAATTAAG---AGAAGAACACATGGACAATCAACACAAACATATTAA 183 Query 307837 AGGATACCGAGATTTATCTCAGAAAGAGATTAATCAAATGAATGC 307881 |||||| |||||||||||||||| || |||||||| |||||||| Sbjct 184 AGGATATCGAGATTTATCTCAGACTGAAATTAATCAGATGAATGC 228 >seq1992 Length=246 Score = 91.5 bits (100), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 96257 GAAGATTATGACCGTGGATACTAATACGTTAAATCCAGTGGGGAGCATTGAATTAAATCT 96316 ||||||||||| ||||||| |||||| |||||||| || || |||||| | ||||| Sbjct 162 GAAGATTATGAGTGTGGATATTAATACCCTAAATCCAACTGGTAGTATTGAACTTAATCT 221 Query 96317 TTTTTCATGGGAGGTTCCTGCGAAC 96341 |||| ||||||||||||||| |||| Sbjct 222 TTTTACATGGGAGGTTCCTGAGAAC 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147553773576518