Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_019402.1 Length=76631 Score E Sequences producing significant alignments: (Bits) Value seq214 351 5e-92 seq260 185 4e-42 seq1412 122 4e-23 seq2242 107 9e-19 seq676 87.8 9e-13 seq1740 86.0 3e-12 >seq214 Length=10658 Score = 351 bits (388), Expect = 5e-92 Identities = 597/862 (69%), Gaps = 35/862 (4%) Strand=Plus/Plus Query 3553 TGTGCGGCAAACCGTGTAGGTAAATCGTACTCTGAAGCTGTAGAAGTGTA-TTACCACTT 3611 || || || ||||||||||||||||| ||||| |||||| || ||| | || || | Sbjct 7508 TGCGCAGCTAACCGTGTAGGTAAATCATACTCAGAAGCT-TATGAGTTTGCTTGTCATGT 7566 Query 3612 GTCAGGACTTTACCCCGAATGGTGGGAAGGTCACAGATTTAACTATCCAATCCTTTGCTG 3671 |||| ||||| |||||| ||| | || |||||| | ||||| ||| || Sbjct 7567 TACAGGCAGATACCCAACGTGGTGGACTGGTAAAAGGTTTAACAAACCAATTCTTGCGTG 7626 Query 3672 GGCTGTTGGTATTACGGGTGACTCAACGCGAAAGGTTCTTCAAAAAGAATTGTTTGGCAC 3731 |||||| || ||||| || || ||||| |||||||| | || |||||||| || || || Sbjct 7627 GGCTGTAGGGATTACCGGAGATTCAACAAGAAAGGTTTTACAGAAAGAATTATTCGGTAC 7686 Query 3732 TCCTATGGGCAAAGACAAAGAAGCGATTGGTACAGGTGCTATTCCACGTGACCTGATTGA 3791 ||| || || ||||| | | ||||| || ||||| ||| | || ||||| Sbjct 7687 TCCAATTGGAAAAGATTTCTCATTATTAGGTACGGGCGCTATCCCAAGGGATTGTATTGA 7746 Query 3792 TATTGAAACGATTGAGAAAGATGGTAACATTGTCAAGATTGCAAAGGTTAAACACCATGA 3851 | || || ||||| || || |||||| | ||||||| || | ||||| ||| | Sbjct 7747 CTTCGATACCATTGAACGTGACGGCAACATTTTAAAGATTGTGCAGATCAAACATCATAA 7806 Query 3852 TGCAAATGGCGATTTTGATGGTTGGTCTACTCTTGAATTCCGTTCAACTCAACAGGGTGA 3911 || | ||||| |||||||| | |||||| | |||||||||||||| ||||||||||| Sbjct 7807 CGCTAGAGGCGAGTTTGATGGCTACTCTACTTTAGAATTCCGTTCAACACAACAGGGTGA 7866 Query 3912 ACACGTACTGATGGGTGCGACAGTCGATTATATCTGGCTGGACGAAGAAGACCCATTCAA 3971 |||| |||||||||| ||||| |||||||| ||| |||||||||||||||||| | Sbjct 7867 ACACACCTTGATGGGTGCTACAGTTGATTATATTTGGATGGACGAAGAAGACCCATATGA 7926 Query 3972 ATCAATGGAGATTTACGCTCAGTGCGTAACTCGTACTGCAACGACTGGTGGCTTGATTAC 4031 ||| |||| || | | |||||||||| |||||||| || ||| || || |||| Sbjct 7927 ATCTATGGCTATCTTCTCTCAGTGCGTTACTCGTACACTGACAACTAAAGGATTAGTTAC 7986 Query 4032 AATCACAGCAACACCTGAAAATGGTTTAACAAAACTAGTTGACCTGTTTATGA------- 4084 || ||||| |||||||| |||||||| || |||| || || ||||||| Sbjct 7987 TATTACAGCCACACCTGAGAATGGTTTGACTGAACTCGTAGATAAATTTATGAAGGGTGA 8046 Query 4085 -----AAGATAATTCAGGTTATTTATATTTCCAAAATGCTACTTGGGATGATGCAC-CG- 4137 | || | ||||| | | |||||||| || ||| ||||| ||||| | || Sbjct 8047 AGGCGATGAAGAGACAGGTGCTCTGTATTTCCAGAACGCTTCTTGGTGGGATGCTCACGT 8106 Query 4138 -CACTTAGATGAAGAAA---CGAAAGCGG---------AACTGTTAGCGTCTATTCCAGC 4184 || | | || | | | ||| || || || ||| |||||| || Sbjct 8107 TGACATTGGTGGTCACATCTCTGAAGAGGATATTAAACAAATGACAGCAGGTATTCCTGC 8166 Query 4185 ATGGCAGCATGAAATGCGTAGTCGAGGTATTCCAATGATGGGTGAAGGTTTGGTTTATGA 4244 |||||| ||||||||| | |||||| ||| || |||| |||||| ||||||| Sbjct 8167 ATGGCAATTAGAAATGCGTTCTAAAGGTATGCCATTGCTGGGATCTGGTTTGATTTATGA 8226 Query 4245 TATCTCTGAACGTGACATTGTTA---TTGACCCGATTGAGATTCCTTCTCATTGGCGTCG 4301 |||| || ||| | | | ||| ||| |||| |||||| | ||| || Sbjct 8227 CGTCTCAGA---TGATTCTATCAAATGTGAACCGTTTGAAATTCCTGATACATGGAAACG 8283 Query 4302 TCTTGTCGCAATTGATATCGGTATCAGTCACGATACAGCAGCAGTTTGGTCAGCATATGA 4361 || ||||||||||||||||| |||| || ||||| || |||||||||||||| Sbjct 8284 AGTTTGTGCAATTGATATCGGTATTGATCACCCAACGGCAGCGGTGTGGTCAGCATATGA 8343 Query 4362 TGCTGCAACTGATACAATTTAT 4383 |||| |||||||||||||||| Sbjct 8344 TGCTAAAACTGATACAATTTAT 8365 Score = 89.7 bits (98), Expect = 3e-13 Identities = 196/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 5009 GCATGGGAATACTATTATGGTAACCTGCCTGAGCCCGTGACTCGTGGTTCATCTAAGTGG 5068 ||||||||||||| || |||||| | || || || ||| ||| || ||||| ||| Sbjct 8806 GCATGGGAATACTTCTACGGTAACTTACCACTTCCTGTAACTGTTGGCTCGTCTAAATGG 8865 Query 5069 GTTGACCGTTCTGTGTGGGAATCAGTCAATGGTACGTTGCAAGAGCTTGTAAGCGTGTTT 5128 ||||||||| |||| |||||| | || || ||||| | ||||| | | | ||| || Sbjct 8866 GTTGACCGTACTGTATGGGAAGCTGTTAACGGTACACTTCAAGACGTAATTAACGTTTTC 8925 Query 5129 ACTTCCAGCGAGAATGCTGTTAAGTTCGCACCTGCTCACTCTCTTGATGGTAATGCTGCT 5188 | | | || | ||||||||||||| |||| | | ||| || | ||| Sbjct 8926 TGTACAGGTGACGAGGCTGTTAAGTTCGTTCCTGATGATGAAGGCGATACAAAAGGTGC- 8984 Query 5189 ATGGCT--GCGACCAAGATGGTAAATAAAATTCTGTTACGTGATAATGAAGGTTACAACG 5246 || || || ||||| ||||||| |||| || | ||||| ||| || || ||| Sbjct 8985 -TGACTTGGCTACCAAACTGGTAAACCAAATCCTCCTGCGTGACAATCCGGGATATAACA 9043 Query 5247 TACTGCATGACGCATTTAAAGAGTGTCTTGTTGCTCGTAACTCATTCATCAA 5298 | || | || |||||||| | || | ||||||||||||||||| Sbjct 9044 TCCTTTCTTCAGCGGCACAAGAGTGTTTAGTAACACGTAACTCATTCATCAA 9095 >seq260 Length=5369 Score = 185 bits (204), Expect = 4e-42 Identities = 146/175 (83%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 9308 TAACCGTTGGATGCCTGAGAACGCAGTATACTTCTTCACTCCAAGCGATTGGACTCAGAT 9367 |||||||||||||||| | |||| | ||||||||| || || || ||||||||||| Sbjct 5088 TAACCGTTGGATGCCTAACGACGCGATTTACTTCTTCTCTGCATCTGACTGGACTCAGAT 5029 Query 9368 GGTTCTGCGCGCACCAGAGCGTACCAAACTGGCGAAAGATGGTTCCTATGAAAAATGGAT 9427 ||||||| | |||||| ||||||| ||||||||||||||||||| || || |||||||| Sbjct 5028 GGTTCTGAGAGCACCACAGCGTACTGAACTGGCGAAAGATGGTTCATACGAGAAATGGAT 4969 Query 9428 GATTGAGATGGAAGTTGGTCTGCGTCACCGCAACCCATACGCTTCCGGCATTCTG 9482 ||| |||||||||||||||||| | ||||| ||||| ||||| || || || ||| Sbjct 4968 GATCGAGATGGAAGTTGGTCTGAGACACCGTAACCCTTACGCATCAGGTATCCTG 4914 Score = 102 bits (112), Expect = 4e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 10334 AATCGTTGGATGCCAGAAGATGCGATTTATTTCTTCCGTGCAAAAGATTGGACCCAGATG 10393 || ||||||||||| | || |||||||| |||||| |||| || ||||| |||||| Sbjct 5087 AACCGTTGGATGCCTAACGACGCGATTTACTTCTTCTCTGCATCTGACTGGACTCAGATG 5028 Query 10394 GTGCTTCGTGCTCCAGAGCGTGTCAAGCTCGCTAAGGATGGCAGCTACGAGAAGTGGATG 10453 || || | || ||| ||||| | || || || ||||| |||||||| |||||| Sbjct 5027 GTTCTGAGAGCACCACAGCGTACTGAACTGGCGAAAGATGGTTCATACGAGAAATGGATG 4968 Query 10454 ATTGAAATGGAAGTAGGTTTACGCCATGCTAACCCATTTGCATCTGGCATCCTG 10507 || || |||||||| ||| | | || |||||| | ||||| || |||||| Sbjct 4967 ATCGAGATGGAAGTTGGTCTGAGACACCGTAACCCTTACGCATCAGGTATCCTG 4914 >seq1412 Length=349 Score = 122 bits (134), Expect = 4e-23 Identities = 159/220 (72%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 67792 ACCACACCAGCACCCAGCAAGCCGAGGACTACACACAGACTGCTAATAGCGTCCATTTCA 67851 || ||||| ||||||||||| || || || | | ||||||| |||| | | |||||| Sbjct 120 ACAACACCTGCACCCAGCAAACCAAGAACAATATACAGACTTGTAATTGGATTGATTTCA 179 Query 67852 TAGCC---GAACGGA------GCCGCGATAAGTTTTACACCAACAAACACCAGAACAATC 67902 || ||||||| || || || |||||| |||| | || | ||||| || Sbjct 180 AAGTGAAGGAACGGAACTGCTGCTGCAATCAGTTTTGCACCGATGAAGATCAGAATGATA 239 Query 67903 GCAACAAAGAAGTCGAGACGGGTCAGATGCTTCATCAGTGAACCTAACACGAAGAACAGA 67962 | || || || |||||||||||||| |||||||| ||||| | |||||||||| Sbjct 240 CCTACGAATGTATCCAGACGGGTCAGATGTTTCATCAGAGAACCGAGAACGAAGAACAAC 299 Query 67963 GCACGTAAACCTAACACAGCCATAATCATGGCAGCATAAA 68002 || | | |||||||||||||||||||| || ||||||| Sbjct 300 GCTCTCAGGCCTAACACAGCCATAATCATAGCTGCATAAA 339 >seq2242 Length=218 Score = 107 bits (118), Expect = 9e-19 Identities = 118/152 (78%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 49785 TTCCGTATTGATTTCTGTCGCTGTTAAGTGTGATACCAATGCTGTGATGTTATCCAAGAA 49844 ||| ||||||||||| | | ||||| || || |||| |||||| |||||||| ||||| Sbjct 205 TTCAGTATTGATTTCAGAAGGAGTTAAATGAGAGACCAGTGCTGTAATGTTATC-AAGAA 147 Query 49845 G-ATGAACTTGACACC-ATGTTCAACAACCCAGAAACGCATACAACGTTTGATATCTTCC 49902 ||| | || ||| || ||||||||||| ||||| ||||| |||| ||||| || Sbjct 146 TTATGTATTT-ACATTGATTCTCAACAACCCAAAAACGAATACACTGTTTAATATCCGCC 88 Query 49903 CAATCGTTTTGACCGAAGTTACGATACAGGAA 49934 |||||||| ||||||||||| ||| ||||| Sbjct 87 CAATCGTTCTGACCGAAGTTGTCATAAAGGAA 56 >seq676 Length=735 Score = 87.8 bits (96), Expect = 9e-13 Identities = 155/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 4557 TGAAACATTCTACAATCCAATTG-ACTGGACAGGTAAGAAGAACAATTTCGTTGAGCCGG 4615 ||| || ||||||||| || | | |||| |||||||||||| ||||||||||||| Sbjct 74 TGACACTTTCTACAATAAGATCGGAATGGAT-GGTAAGAAGAACTTCTTCGTTGAGCCGG 132 Query 4616 GAATCATTGAGATGCTACAACGAATGAAGACAGGTCGATTAAAGGTGTT------TAGTA 4669 |||||| || || | || |||||| | ||||| |||| || | || | || Sbjct 133 GAATCACCGATATTCGTGAAAGAATGATGTCAGGTAGATTTAAAATCTTCAATAATGGTG 192 Query 4670 CATGTGGTCGATTCTTTGAAGA-AATGCGCCGATACCACAGAAAAGATGGGAAAATTGTC 4728 |||||| | | |||||||||| || || || || ||| | ||||| || |||||| Sbjct 193 CATGTGCTAAACTCTTTGAAGAGAAAGC-TCGTTATCACCGTAAAGAAGGTCGAATTGTT 251 Query 4729 AAAGAGTTCGACGATACAATGGACGCCGCACGATATTCAGC 4769 ||||| ||| ||| ||||| || || |||||||| Sbjct 252 AAAGAACACGATGATTTGATGGATGCTATGCGTTATTCAGC 292 >seq1740 Length=282 Score = 86.0 bits (94), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 8/126 (6%) Strand=Plus/Minus Query 46702 TCGTGAGCATCAACAATGTCCCGAGGAAGAA----TGTAGTTGCGAGCGAAATGCTTAGA 46757 ||||||||||||| | || |||||||||| || | |||| ||||||||||| Sbjct 282 TCGTGAGCATCAATTACCTCACGAGGAAGAAGCCCTGAAT----GAGCAAAATGCTTAGA 227 Query 46758 AACAACGCCGGCAAGTAAATCTCGCTGTACAGGGAAGACTTTGGCATCCTTGTTAGCGTT 46817 |||| || || || ||||| ||||| |||||||| ||||| ||||| || || || || Sbjct 226 TACAATTCCAGCGAGCAAATCACGCTGAACAGGGAATACTTTAGCATCTTTATTGGCATT 167 Query 46818 TTCTTT 46823 ||| || Sbjct 166 TTCGTT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245086959163792