Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 235 1e-56 >seq6 Length=21794218 Score = 235 bits (260), Expect = 1e-56 Identities = 578/868 (67%), Gaps = 29/868 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 907676 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 907617 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| || |||| | | || ||| || | | ||| Sbjct 907616 CATCCAGTCGAACGGGTTGGCGACCTTGTACATCTTCTTG-CAG-CCGAGCGCCATGAGC 907559 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 907558 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 907499 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || || ||| |||| || | ||||| || | || ||| Sbjct 907498 GCGACGGGGAGCGCGTCGCAGACGAATTCCCTCTCGATGTCGACGGCGTCGGCGACGATC 907439 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||||||| | | ||| ||| ||| | | | || || | |||||| Sbjct 907438 TCGCGGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCG---TATAGGAGGCAGGCG 907382 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 907381 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 907322 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||| ||| Sbjct 907321 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 907262 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| || | | |||||| Sbjct 907261 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 907206 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | |||||||| ||||| | ||| ||| | || || ||||| |||| Sbjct 907205 GCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGA 907150 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | ||||| ||||||| | ||||| Sbjct 907149 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACA 907093 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | Sbjct 907092 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCGA 907033 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| || | || ||||| || || || || || || | Sbjct 907032 CCTGCACGTCGGACATGAACCTGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCCG 906973 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| || | ||||| | ||| || || | || Sbjct 906972 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGCCTCTCGTCGGGGGACAGCGCGGCGTCCC 906913 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || ||| | |||||||| ||||| | || | Sbjct 906912 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCACCGCCT 906853 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | ||||| | |||| || | ||| || Sbjct 906852 TCTTGTAGAACTCCCAGATCTGCGGGTA 906825 Score = 232 bits (256), Expect = 1e-55 Identities = 580/871 (67%), Gaps = 35/871 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 6278519 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 6278578 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCA-- 47954 ||| || ||| ||||||| ||| |||| | | || ||| |||| | ||| Sbjct 6278579 CATCCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTG-CAG-CCCA---GGGCCATG 6278633 Query 47955 -GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | ||| | || |||||| |||||||||| | ||||||| | ||||||||| | | Sbjct 6278634 AGGAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACG 6278693 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || | ||||| | || | || |||||| |||| || | ||||| || | || Sbjct 6278694 AGCGCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCAACG 6278753 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| |||||| ||| | | ||| ||| ||| | | | ||||| | |||| Sbjct 6278754 ATCTCGCGGACGCGGACCTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAG 6278810 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| | ||||| ||| ||||| ||| ||||||| |||||||||| ||| || Sbjct 6278811 GCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCC 6278870 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || |||||||| || || ||| ||||| |||||||||||| Sbjct 6278871 GGCATTAGGCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATG 6278930 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGAT 48312 ||||| || ||||| || ||| | ||| | |||||| || | | ||| Sbjct 6278931 CCCTCGACACAGGCGAAGGCAACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGAT 6278986 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCC 48368 |||| | |||||||| ||||| | ||| ||| | || |||||||| | Sbjct 6278987 CCAGCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGACGGTGTCTATGGCGC 6279042 Query 48369 GGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGT 48425 |||||| | | ||| ||| | |||| | ||||| ||||||| | || Sbjct 6279043 GGAAGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGT 6279099 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 ||||||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| Sbjct 6279100 ACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGG 6279159 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 |||||||| || | ||| || | || ||||| || || || || || | Sbjct 6279160 CGACCTGCACGTCGGACATGAACCTGGACGCGAGGTTCTCGAGCACGATGCCGTCCGACG 6279219 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCAT 48602 | || |||||||| || || || | ||| |||||||||| | ||| || || | Sbjct 6279220 CCGCGAAGAAGGCCAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGACAGCGCGGCGT 6279279 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | |||| | ||||| || || || | |||||||| ||||| | | Sbjct 6279280 CCCAGTGGCGCGCGTCGGAGGAGAGGTCGACCTCCTCGGCCGTCCAGAACGACGCCACCG 6279339 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || ||||| | |||| || | ||| || Sbjct 6279340 CCTTCTTGTAGAACTCCCAGATCTGCGGGTA 6279370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503794397440