Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 181 2e-40 >seq6 Length=21794218 Score = 181 bits (200), Expect = 2e-40 Identities = 493/739 (67%), Gaps = 30/739 (4%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG-AGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || ||| || Sbjct 906955 ACGTGCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACCTC-GCGTCCAGG 907013 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || |||||| || ||||| | | | |||||||| |||||||| ||||| Sbjct 907014 TTCATGTCCGACGTGCAGGTCGCCGAGGC-ACGCGCCTTCTACGGCTTCCAGATCGCCAT 907072 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 ||| || | ||||| ||| |||| | ||| || ||| ||||| |||| || Sbjct 907073 CGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGT 907132 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| || || || || | |||||||| | | ||| | | | ||||| Sbjct 907133 CGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGA 907192 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || || ||||||| || |||||| || || |||| Sbjct 907193 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTCGCCT 907248 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | || ||| || ||||| ||||| ||| || || || |||| |||||||||||||||| Sbjct 907249 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 907306 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 907307 GAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 907366 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 |||||| | || || |||||||| || ||| | || | | | | ||| | || | Sbjct 907367 CCTCCACTGCGACTTCGCCTGCCTCCTATAC---GACCTCCTCCGCGGCAAGC--TC-GA 907420 Query 26070 AGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 ||| | |||| | ||| || || || || || ||||||| ||| || Sbjct 907421 CGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAATTCGTCTG 907480 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||||| ||||| || Sbjct 907481 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 907540 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTAC-AGTACGC 26242 || || ||||||| ||||| || | ||| || || || ||| | ||| || ||| Sbjct 907541 GTTCGTCGCCGACCGCCTGCTCATGGC-GCTCGG-CT-GCAAGAAGATGTACAAGGTCGC 907597 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||||||||||| ||||| ||| || || | || |||||||||||||| || | Sbjct 907598 C-AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGA 907656 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | ||||||||||| || Sbjct 907657 AGCGCGTCGGCGACTACCA 907675 Score = 159 bits (176), Expect = 6e-34 Identities = 559/858 (65%), Gaps = 29/858 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||| ||| | || || Sbjct 6279361 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCCGAGGAGGTCGACCTC 6279302 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| |||| || ||| ||||||| || || || Sbjct 6279301 TCCTCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCC 6279242 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG-AG 25652 ||||| |||| ||||| || || || || || || ||| |||||| || ||| || Sbjct 6279241 CACGTGCTGGCCTTCTTCGCGGCGTCGGACGGCATCGTGCTCGAGAACCTC-GCGTCCAG 6279183 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCA 25711 |||| || |||||| || ||||| | | | |||||||| |||||||| |||| Sbjct 6279182 GTTCATGTCCGACGTGCAGGTCGCCGAGGC-ACGCGCCTTCTACGGCTTCCAGATCGCCA 6279124 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 |||| || | ||||| ||| |||| | ||| || ||| ||||| |||| || Sbjct 6279123 TCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACG 6279064 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||||| || || || || | ||||| || | | ||| | | | ||||| Sbjct 6279063 TCGAGAAGGACCGCCTCTTCCGCGCCATAGACACCGTCCCCGCCGTGCGCCGCAAGGCCG 6279004 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||||| |||||| || || ||||||| || |||||| || || ||| Sbjct 6279003 ACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTTGCC 6278948 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 || || ||| ||||||||||| ||| || || || |||| ||||||||||||| || Sbjct 6278947 TTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTAAA 6278889 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||| || || || ||||||||||||||| | | |||||||| Sbjct 6278888 GAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 6278829 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || ||| | || || |||||||| |||||| | || | | | | | || || | Sbjct 6278828 CCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGC-AAGCTCGACG 6278773 Query 26070 AGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || | |||| | ||| | || || || || ||||||| |||||| Sbjct 6278772 AGGTCCGCGTCCGCGAGATCGTTGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCG 6278713 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | ||||||||||| ||||| |||| Sbjct 6278712 ACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGT 6278653 Query 26189 ATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACGCC 26243 || ||||||| || || || | ||||| || || ||| | |||| || |||| Sbjct 6278652 TCGTCGCCGACCGCCTCCTCATGGC-CCTGGG-CT-GCAAGAAGATGTACAACGT-CGCC 6278597 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 ||||| ||||||| ||||| ||| || || | || |||||||||||||| || || Sbjct 6278596 -AACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAA 6278538 Query 26304 GAGGGTCGGCGACTATCA 26321 | | ||||||||||| || Sbjct 6278537 GCGCGTCGGCGACTACCA 6278520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928815878095040