Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 seq8 111 2e-19 seq3 98.7 1e-15 seq7 91.5 2e-13 >seq1 Length=33916305 Score = 132 bits (146), Expect = 5e-26 Identities = 149/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 8518 TACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTAT 8577 || || ||||||||||| || | | ||| | ||||| ||| | || | |||| Sbjct 8033924 TAGAATGGTGGTCCTTATGAGATAATTGTTCAC-ACTTCTCACTTAGTGTAGCTTGTTAT 8033866 Query 8578 ATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCA 8637 ||||||||||| |||||||| || ||| || || |||||||||||||| ||||||| Sbjct 8033865 ATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 8033806 Query 8638 TACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGT 8697 || ||||||| |||||| |||||| || || | ||| | | || ||| |||||||||| Sbjct 8033805 TATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAAGGA 8033746 Query 8698 TCGTTCTCTGATGGTATG 8715 ||||||||||||||| Sbjct 8033745 AGTTTCTCTGATGGTATG 8033728 >seq8 Length=18224760 Score = 111 bits (122), Expect = 2e-19 Identities = 114/148 (77%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 10228 TTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAG 10287 |||||| ||| ||||| || |||||| || || ||| |||||||||||| |||||| Sbjct 15457067 TTTTGTTTCTGTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAG 15457008 Query 10288 TTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGAC 10347 ||| || || || || || || | | | | |||||| |||| || ||||| ||||||| Sbjct 15457007 TTTTGGAGT-GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAA 15456949 Query 10348 GCTCAATCCCTTCCATATGATGGGAGTT 10375 | | ||||| || ||||||||||||||| Sbjct 15456948 GTTAAATCCATTTCATATGATGGGAGTT 15456921 >seq3 Length=29620734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 10241 TTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCG 10300 ||||| || |||||||| || || || | | ||||||| ||| ||||| || || Sbjct 22064864 TTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAGCA 22064923 Query 10301 GCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTC 10360 ||||| || |||||| | ||||| |||| | ||||| |||||||| || || || Sbjct 22064924 GCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCATTT 22064983 Query 10361 CATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTA 10402 |||||||||||||||||||| || | || | ||| || ||| Sbjct 22064984 CATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTA 22065025 >seq7 Length=18603524 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 10190 CCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATC 10249 ||||| ||||| || | || ||||| || || ||||||||||| || ||||| || Sbjct 9543634 CCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTCCTGATT 9543693 Query 10250 TATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTC 10297 |||||||| || || || | |||||||||||||||||||| |||||| Sbjct 9543694 TATCCACTGGGGCAATCCGGCTGGTTCTTTGCGCCGAGTTTTGGCGTC 9543741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516463918104000