Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq2451 170 4e-37 seq2396 104 5e-17 >seq2451 Length=202 Score = 170 bits (188), Expect = 4e-37 Identities = 161/203 (79%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 87279 TTGTTTCTCCAGAAGCACTATCTATTATTCAGTCTGCAACTACTTCTAGTTTTGCACGCA 87338 ||||||||||| || ||| ||||| |||||||||||||||||||||||||||| || | Sbjct 1 TTGTTTCTCCAACTGCTCTAACTATTCTTCAGTCTGCAACTACTTCTAGTTTTGCTCGTA 60 Query 87339 GTACTGAAGGTACTTTCGAAGCACCAACCAACGTTAAATTTGCTGGTACTCTAAATGGTA 87398 ||||||||||||||| ||||| ||||| ||||||||||| | |||| ||||| | Sbjct 61 CTACTGAAGGTACTTTTGAAGCTCCAACTAACGTTAAATTCGTTGGTGTACTAAACTCAA 120 Query 87399 CTATGCGTATCTACGTTGATACCTATGCTTCTGATCTGGA-AGATATCCTGATTGGTTAT 87457 | |||||| | || ||||||||||||||| ||| | | | ||| | || || ||||| Sbjct 121 CCATGCGTGTATATGTTGATACCTATGCTGATGA-CAGTACTGATGTACTAATCGGTTAC 179 Query 87458 AAAGGTGCTAACGAAACTGACGC 87480 |||||| | | |||||||| || Sbjct 180 AAAGGTAATCAAGAAACTGATGC 202 >seq2396 Length=206 Score = 104 bits (114), Expect = 5e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 305900 CTGATAAAGATCAAATTGATACGGCTATTCGTGAACTTAAAGAAGAAACAAAAATTGATG 305959 |||||||||||||||| | || || | ||||| |||||||||||||| || ||||||| Sbjct 166 CTGATAAAGATCAAATCCAAACAGCATTGCGTGAGCTTAAAGAAGAAACGAAGATTGATG 107 Query 305960 TACCAGAAAAAGTACTTCGTGGTAATA-TAGTAAACGTAATGGATTTTTCTGATATGAAT 306018 ||||| ||||||||| ||| || | || || || ||||| ||| |||| | ||| Sbjct 106 TACCAATGAAAGTACTTGAAGGTTCTATTCGTGAAAGT-ATGGAATTTGGTGATTTCAAT 48 Query 306019 CGTTCCTTGCGTTGGCGTATTCTCACTAA 306047 ||||| | || ||||||||| | || || Sbjct 47 CGTTCACTACGCTGGCGTATTATTACAAA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106422286368392