Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-21 seq2 105 4e-17 seq5 96.9 2e-14 seq12 95.1 8e-14 seq11 89.7 3e-12 seq4 87.8 1e-11 seq8 86.0 4e-11 >seq3 Length=29620734 Score = 120 bits (132), Expect = 2e-21 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || ||||||||||| | || |||||||| ||||| || ||| Sbjct 28047266 ACTGTCCCTGCTTACTTCAATGATTCTCAGAGGCAGGCAACTAAGGATGCTGGTGTTATT 28047325 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | |||||||||||| | ||||| ||||| || |||||||| || ||| ||||||||||| Sbjct 28047326 GTGGGTCTTAATGTTATGCGTATCATTAACGAGCCAACAGCTGCTGCAATTGCTTATGGT 28047385 Query 474866 CTTGATAAGAA 474876 ||||| ||||| Sbjct 28047386 CTTGACAAGAA 28047396 >seq2 Length=27082872 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || || || || || || | ||||| ||||| || || Sbjct 2373299 ACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGT 2373358 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| ||| || || ||||| |||||||| || ||||| || || || || || || || Sbjct 2373359 CCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCC 2373418 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| |||||| || ||||| |||| | | | |||| Sbjct 2373419 TTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCA-CCTCAA 2373477 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| || ||||| |||||||| ||||| || || Sbjct 2373478 GGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTG 2373517 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| || ||||| |||||||||||| |||| ||||| ||||| || ||||| Sbjct 24455404 GCTGTGATTACAGTCCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 24455345 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | | || || ||||||||||| || || || || Sbjct 24455344 GGTCGCATTGCCGGACTTGATGTTCAAAGGATCATCAATGAACCAACTGCTGCTGCTCTG 24455285 Query 474857 GCTTATGG 474864 ||||||| Sbjct 24455284 TCTTATGG 24455277 Score = 91.5 bits (100), Expect = 1e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 ||| || ||||||||||| || || ||| |||||||| || ||||| | | ||| Sbjct 24455291 AGCAGCAGTTGGTTCATTGATGATCCTTTGAACATCAAGTCCGGCAATGCGACCAGCATC 24455350 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTTT 290959 |||||||| || || ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 24455351 CTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGGACTGTAATCACAGCCTTT 24455408 >seq5 Length=20131956 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || | | ||| || || ||||| ||||| || || || | || Sbjct 16284413 TTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGTCTCTGC 16284354 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || ||||| || |||||||| || |||||| || || || || || || Sbjct 16284353 TGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCT 16284294 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || | | ||||||||||| || |||||||||||||| ||||||||||| Sbjct 16284293 GAGCTCTCAACCT-CGAGGGTAATAGTCTTGCCGGTGAGAGTCTTGACGAAAATTTG 16284238 >seq12 Length=15318893 Score = 95.1 bits (104), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||| ||||| || ||||| || || | |||||| |||||||| Sbjct 5033384 GCAGTGGTTACTGTTCCGGCATACTTCAATGACTCACAGAGAACAGCAACAAAAGATGCT 5033443 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| | || || || | | ||| | || ||||| ||||| ||||| || || | ||| Sbjct 5033444 GGACGCATCGCCGGATTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCCCTT 5033503 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 5033504 GCTTATGGTTTTGAGAAGAA 5033523 >seq11 Length=16001410 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| ||||| | || || || || |||| Sbjct 15792644 ATGCTGTTGTCACTGTTCCTGCTTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 15792703 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | ||||| || || || || || || || || Sbjct 15792704 CTGGAGTGATTGCTGGTCTCAATGTCATGCGTATCATCAACGAGCCCACCGCTGCAGCTA 15792763 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 15792764 TTGCATATGGTCTTGACAAGAA 15792785 >seq4 Length=21479432 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| ||||| || | || ||| || | ||||| || || || || Sbjct 18578404 ACGAAGGCGGAGGACAAGGTGCAAGGTGGATTCCTTCTGGATGTTATAGTCTGCAAGTGT 18578345 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| ||||| || || || |||||||| || || || ||||| ||||| Sbjct 18578344 ACGCCCATCCTCAAGCTGCTTGCCGGCGAATATAAGACGCTGCTGGTCTGGAGGGATTCC 18578285 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| ||||| | | | | | ||| Sbjct 18578284 CTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCGACCTCCAA 18578225 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || || || || ||||| ||||||||||| || || Sbjct 18578224 GG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 18578186 >seq8 Length=18224760 Score = 86.0 bits (94), Expect = 4e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 321789 GCAATAATTAATGGTAAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAAC 321847 |||||| | |||| | || | ||||| || || |||||||||||| | ||| || || Sbjct 2258485 GCAATACTCCATGGCACTCCTAATTCAT-CAATGTTAATATTTGGATCTGGTGTTATGAC 2258543 Query 321848 TGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTT 321907 |||||| | || | ||||||||| || ||||| | |||||||||||||| ||||| || Sbjct 2258544 AGTACGAGCTGAGAAATCAACACGCTTCCCCATCAAGTTTCCTCTAATACGGCCTTCCTT 2258603 Query 321908 T 321908 | Sbjct 2258604 T 2258604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268072348923668