Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq8 123 3e-23 seq1 113 5e-20 seq4 91.5 2e-13 >seq8 Length=18224760 Score = 123 bits (136), Expect = 3e-23 Identities = 125/161 (78%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 161703 CATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAG-GGTA 161761 |||||| |||||||| || || ||||| |||||||| | | | ||| || || ||| Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATTTGTAGTT---AGCCAAAGGTC 4907443 Query 161762 AAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGC 161821 | ||||| || || ||||| || | |||||| |||| |||||| | |||||| |||| Sbjct 4907442 ATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGC 4907383 Query 161822 ACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862 |||| || |||||||||||||||||||| ||||| ||| || Sbjct 4907382 ACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 162266 GAGTTCCTATCTTGAGGGTGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACG 162324 ||||||| || | || ||| | ||||||| |||| |||||||| || || || | Sbjct 15457281 GAGTTCCAATTTGGAAGGTTGTAG-TTTCTTAACTGCAGCAGTTTCCACCCCTGCCAATA 15457223 Query 162325 CTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCT 162384 | | | || ||| | |||| |||||| | || || ||||| | || | || | Sbjct 15457222 GTTTAGTACACTCTTTGTTGCTACTATGGTGCCCGGA-----AAGGGTATTTTACTCGTT 15457168 Query 162385 GGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAG 162444 |||| ||| | || || ||||||||||||| || ||||| || || |||||||| |||| Sbjct 15457167 GGTGTCAATTAGGTGGTCTCTGGACTTTTGGTGCTCTCCATGGGGCTTTTGCACTAATAG 15457108 Query 162445 GTTTCATGCTTCGCCAGTTTGAACTGGCACG 162475 |||||||| | | || ||||| || || || Sbjct 15457107 GTTTCATGTTACATCAATTTGACCTTGCTCG 15457077 >seq1 Length=33916305 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||| |||||||||||||||||||| || ||||||||| ||||||||||||||| || Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 8033810 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321 ||||| ||||||| ||| || || || | | | | ||| || | || ||| | ||||| Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 161322 AGGTTCTTTCTCTGATG 161338 ||| ||||||||||| Sbjct 8033749 AGGAAGTTTCTCTGATG 8033733 >seq4 Length=21479432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||| ||||| || ||||| || || ||||| || ||||||||||| || ||| Sbjct 9166025 TACATCCTGGACGCGGCCGAGGAGGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC 9166084 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | || || || || |||| |||||||| ||||| |||||||| Sbjct 9166085 GCGTGCTCCACCTGCGCCGGCAAGGTCGTGGAGGGCACCGTCGACCAGTCGGACCAGTCG 9166144 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| ||||| |||| ||| | || | | | || || || || | || || || Sbjct 9166145 TTCCTCGACGACACCCAAGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACC 9166204 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATT 158563 || || || || ||||| ||||||| || ||||||| Sbjct 9166205 TCGGACTGCGTCATCCAGACTCACAAGGAGTCAGACCTGTATT 9166247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547730144521560