Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq8 107 6e-19 seq1 102 2e-17 >seq8 Length=18224760 Score = 107 bits (118), Expect = 6e-19 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||| || Sbjct 4907345 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAGATT 4907404 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCT-GCTACAATGG 17952 ||| ||||| | |||||||| ||| || || || ||| ||| |||||| Sbjct 4907405 AGCATGGTTGATGATATCAGCCCAAGTATTTATAACATGACCTTTGGCTAACTACAA--- 4907461 Query 17953 ATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCAT 17989 |||||||||| |||||||| || || || |||||||| Sbjct 4907462 ATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCAT 4907498 >seq1 Length=33916305 Score = 102 bits (112), Expect = 2e-17 Identities = 112/144 (78%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 18350 CATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAG-AAATACTGAGAAGGCA 18407 |||||||||||||||||| ||||| |||| ||| |||| | || ||||| | || | ||| Sbjct 8033728 CATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGT-AGTA-GCA 8033785 Query 18408 GCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTA 18467 ||||| || | || ||||| |||||| |||||| || |||||||| || | |||| Sbjct 8033786 GCTGCAACAAGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 8033845 Query 18468 AGTTCCCATTGTCGTCCCATGTAA 18491 |||||||| | || ||||| ||| Sbjct 8033846 AGTTCCCACTCACGACCCATATAA 8033869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151313923907154