Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq8 123 3e-23 seq1 105 8e-18 seq3 82.4 1e-10 >seq8 Length=18224760 Score = 123 bits (136), Expect = 3e-23 Identities = 151/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 || ||| ||||| || |||||||||||||| ||||| |||||||| |||||| |||| || Sbjct 4907342 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAG 4907401 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACC-CTGACCATCAAGGA 103289 | ||| |||||| | || ||||| || || | ||| |||| || | | | | | Sbjct 4907402 ATTAGCATGGTTGATGATATCAGCCCAAGTATTTATAACATGACCTTTGGCTAACTACAA 4907461 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC--AAGTGC 103347 | |||||||| ||||||||||| |||||||| |||||| | |||| ||| ||| || Sbjct 4907462 ---ATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATGCTACTAATACCTAAAGCGC 4907518 Query 103348 --GGTGAACCAGATACCCACTA 103367 |||||||| ||||| ||| Sbjct 4907519 ATAGTGAACCATGTACCCCCTA 4907540 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 102162 AACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAG 102221 ||| ||||||||||| ||||| || | | |||| || || || || || | |||||| | Sbjct 15456921 AACTCCCATCATATGAAATGGATTTAACTTCCAATTGTGAAATCCTTGGAAGAAGAGGAT 15456980 Query 102222 GAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAG 102281 | ||| |||||| ||||| || ||||| ||| |||||||||||| || || || | Sbjct 15456981 GGATCAAAATATTGCTGC-ACTCCAAAACTCGGCACAAAGAACCAACCAGATTGCCCCGG 15457039 Query 102282 AGGATAGATGAGAAACACACTGACAAAA-ACAGCGA 102316 |||| || || || ||| |||||| |||||| Sbjct 15457040 TGGATTAATTAGGAATACAGAAACAAAAGGCAGCGA 15457075 >seq1 Length=33916305 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 103690 CATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGC 103749 |||| |||| ||||| |||||||||| ||||| | |||||| | | | ||||| Sbjct 8033728 CATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGC 8033787 Query 103750 CGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAA 103809 |||||| ||||||| ||||| ||| ||||| || ||||| ||||||||| | || Sbjct 8033788 TGCAACAAGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAG 8033847 Query 103810 TTCCCACTCACGTCCCATATA 103830 |||||||||||| |||||||| Sbjct 8033848 TTCCCACTCACGACCCATATA 8033868 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 102168 CATCATATGGAATGGGTTG-AGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATC 102226 ||||||||| |||||||| | ||||||||||| || | || | |||||| ||||| Sbjct 14418870 CATCATATGAAATGGGTTATAATGTCCAGTTATGAAATCTTTGGAAGAAGAGGGCGAATC 14418929 Query 102227 TAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGAT 102286 | ||| | ||| || ||||| || |||||||||||| ||| || || || |||| Sbjct 14418930 AAGATACCATTGCTACGCCAAAATTTGGTGCAAAGAACCAATTGGGTTGCCCTAGTGGAT 14418989 Query 102287 AGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACG 102346 || | || || ||| ||| | | || ||| |||||| ||| ||||| | | Sbjct 14418990 CAATCGGGAATACGGAAACACAAATAATAGTTGGACCAAAGAACGAAATTGCATTACAAG 14419049 Query 102347 GACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAA 102406 | ||| | || || ||| | || |||||| | | |||| ||| || || |||| Sbjct 14419050 GTTGAAATTGAACAGACTGAGCAAGTTCAAATTGATGTAACATGCAACATATTAGTGCAA 14419109 Query 102407 ATGCACCGTGGAGAGCCACAAAA 102429 | | || | |||||| | |||| Sbjct 14419110 AATCCCCAT-GAGAGCAAAAAAA 14419131 >seq3 Length=29620734 Score = 82.4 bits (90), Expect = 1e-10 Identities = 133/190 (70%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 102811 CACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGT 102869 |||| ||||| | ||||| | ||||| ||||| ||| | ||| |||| | || | | Sbjct 28668356 CACAGTCCGACTTAGGGTAGGAGACGCATGTCAGCACATAGCCTTCTTCCTGCTGCGCAT 28668297 Query 102870 CATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAG 102929 |||| || || || || || || || || || | ||||||||||||||||| | Sbjct 28668296 CATCAAGGAATGACCCGTCCGACTGGTCGACGGTGCCAGCCTCAATCTTACCAGCACAGG 28668237 Query 102930 TAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGT 102989 |||| || || |||||||| || || || ||||| || || || || || ||||| | Sbjct 28668236 TAGAGCATGCTCCAGCACGGCATGAGTAGGGCAGCTCCACTCCGGCGGTCTCGGCAGCAT 28668177 Query 102990 CTAGAATATA 102999 | || || || Sbjct 28668176 CAAGGATGTA 28668167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633493873970280