Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 2e-12 seq1 86.0 2e-12 seq6 82.4 2e-11 >seq8 Length=18224760 Score = 86.0 bits (94), Expect = 2e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || ||||| || Sbjct 4907346 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAGATTA 4907405 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGC-AGCTAGCAGAGA 21589 ||| |||| | || |||||||| || || || || || || | || | || | | | Sbjct 4907406 GCATGGTTGATGATATCAGCCCAAGTATTTATAACATGACCTTTGGCTAACT---ACAAA 4907462 Query 21590 TTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA 21629 |||||| || ||||| || || | ||||||||||||| || Sbjct 4907463 TTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATGCTA 4907502 >seq1 Length=33916305 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21986 CATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGC 22045 |||| ||||||| ||| || || |||| || |||| | ||| | || ||| ||||| Sbjct 8033728 CATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGC 8033787 Query 22046 GGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAG 22105 || ||| ||||||| || |||||| ||||| || | ||| || || || | || || Sbjct 8033788 TGCAACAAGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAG 8033847 Query 22106 TTCCCACTCTCGTCCCATGTAA 22127 ||||||||| || ||||| ||| Sbjct 8033848 TTCCCACTCACGACCCATATAA 8033869 >seq6 Length=21794218 Score = 82.4 bits (90), Expect = 2e-11 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 21644 AGCAAACCAAATACCTACAACAGGCCAGGCAG-CAAGAAAGAAATGAAGACTACGGGAAT 21702 || ||||||||| ||||| || | || || | |||||| ||| || | | |||||| | Sbjct 13078320 AGTAAACCAAATCCCTACTACTGATCAAGCGGTCAAGAA-GAAGTGTAAAGAACGGGAGT 13078262 Query 21703 TATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATAT 21762 | |||||||||||||| | |||||| | | |||||||| || ||||| || |||||| Sbjct 13078261 TGTTAAAGCTAGCATACT-GAAGATTAATCAGCCAAAATAACCATGAGCGGCCACAATAA 13078203 Query 21763 TGTAAG 21768 | |||| Sbjct 13078202 TATAAG 13078197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146203675075980