Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 118 5e-22 seq6 93.3 2e-14 >seq2 Length=27082872 Score = 118 bits (130), Expect = 5e-22 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 ||||||||| || |||||||||||||| || || | |||||| ||||||||||| || Sbjct 25695989 ACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAG 25695930 Query 26125 CATTGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| || || ||||| |||| | | || ||||| | |||| | | || || | || Sbjct 25695929 CATGGGGAC-AATCCCGTTGGATGTTCCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTC 25695871 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 | |||| |||| ||| | ||| ||||||||||| ||||| || | ||||| ||| Sbjct 25695870 TTATATTGTGAAT-TGAGACACCAATTCCACCAGCACATTTACTTATGGTGGCACATTCT 25695812 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | || |||||| ||||||| Sbjct 25695811 GAGAGGGTATCATAAATTCCCTCAATACTATCATCTTTCAT 25695771 >seq6 Length=21794218 Score = 93.3 bits (102), Expect = 2e-14 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| ||||| || |||||||||||||| || || | ||||| ||||||||||| | Sbjct 2575457 TACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTA 2575398 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | ||| | || ||| ||||| | | || | | || || | || Sbjct 2575397 GCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCTCGGATATAGCTCCCGGTAGCTC 2575338 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC- 26241 |||||| |||| | ||| | ||| ||||| ||||| |||| || | ||||| || Sbjct 2575337 TAATATTGTGAAC-TGATACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCC 2575279 Query 26242 -TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||| ||||| ||||||| | ||||| ||| ||||||| Sbjct 2575278 TTCAAA--GTATCATAAATTCCCTCGATGCTGTCATCTTTCAT 2575238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032317942825