Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 5e-15 seq1 95.1 2e-14 seq7 87.8 2e-12 seq3 86.0 8e-12 >seq8 Length=18224760 Score = 96.9 bits (106), Expect = 5e-15 Identities = 265/412 (64%), Gaps = 53/412 (13%) Strand=Plus/Plus Query 23843 AACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAG 23902 ||||||||||||||| || || || | | |||| || ||||| || |||| |||||| | Sbjct 15456921 AACTCCCATCATATGAAATGGATTTAACTTCCAATTGTGAAATCCTTGGAAGAAGAGGAT 15456980 Query 23903 GAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAA 23962 | | | || || || || || || ||||||||| ||||||||||| || || ||| Sbjct 15456981 GGATCAAAATATTGCTGC-ACTCCAAAACTCGGCACAAAGAACCAACCAGATTGCCCCGG 15457039 Query 23963 AGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATT 24022 |||| || ||||||||||| || ||||| Sbjct 15457040 TGGATTAATTAGGAATACAGAAAC---------------------AAAAG---------- 15457068 Query 24023 GTAGGGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAG 24082 | || ||| || || || ||||| ||| ||||||| |||||||| || Sbjct 15457069 GCAGCGAC--------------CGAGCAAGGTCAAATTGATGTAACATGAAACCTATTAG 15457114 Query 24083 TGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTG 24142 |||||| || || ||||||||| |||| | ||| || || || | ||| ||| || Sbjct 15457115 TGCAAAAGCCCCATGGAGAGCACCAAAAGTCCAGAGACCACCTAATTGACACCAACGAGT 15457174 Query 24143 AAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGC 24202 ||| | ||||| || || | ||| ||||| | | ||| || | | | | || Sbjct 15457175 AAAATACCCTT-----TCCGGGCACCATAGTAGCAACAAAGAGTGTACTAAACTATTGGC 15457229 Query 24203 AGGCGTCGAGACAGCTGCCG-TAAGAAAGTTAGCACCCTCAAGATAGGAACT 24253 ||| || || || ||||| | ||||||| || ||| || | || |||||| Sbjct 15457230 AGGGGTGGAAACTGCTGCAGTTAAGAAA-CTACAACCTTCCAAATTGGAACT 15457280 >seq1 Length=33916305 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27249 CATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGC 27308 |||| |||| |||||| |||||||| | ||| || | | ||| | | | | ||||| Sbjct 8033728 CATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGC 8033787 Query 27309 AGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAG 27368 || || ||||||||||||| ||| ||||| ||||||||||| | ||| | || Sbjct 8033788 TGCAACAAGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAG 8033847 Query 27369 TTCCCACTCACGTCCCATATAA 27390 |||||||||||| ||||||||| Sbjct 8033848 TTCCCACTCACGACCCATATAA 8033869 Score = 91.5 bits (100), Expect = 2e-13 Identities = 181/263 (69%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 23849 CATCATATGGAAGGGGTTG-AGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACC 23907 ||||||||| || ||||| | |||||||||||||| | |||| |||||| ||| | Sbjct 14418870 CATCATATGAAATGGGTTATAATGTCCAGTTATGAAATCTTTGGAAGAAGAGGGCGAATC 14418929 Query 23908 TGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGAT 23967 | | | || || || ||| | || |||||||||||| | || || | |||| Sbjct 14418930 AAGATACCATTGCTACGCCAAAATTTGGTGCAAAGAACCAATTGGGTTGCCCTAGTGGAT 14418989 Query 23968 AGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGG 24027 || ||||||| || || | | | | | |||||| | || | ||| ||||| | | Sbjct 14418990 CAATCGGGAATACGGAAACACAAATAATAGTTGGACCAAAGAACGAAATTGCATTACAAG 14419049 Query 24028 GACGGATTCCAATTAGAC-GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCA 24086 | | | | || |||| | || |||||||| ||| ||||||| ||| ||| |||||| Sbjct 14419050 GTTGAAATTGAA-CAGACTGAGCAAGTTCAAATTGATGTAACATGCAACATATTAGTGCA 14419108 Query 24087 AAGGCACCGTGGAGAGCAACAAA 24109 || | || | |||||||| ||| Sbjct 14419109 AAATCCCCAT-GAGAGCAAAAAA 14419130 >seq7 Length=18603524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 23922 ACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACA 23981 || || |||||||||||||||||||| || || |||| ||||| || |||||||| Sbjct 9543740 ACGCCAAAACTCGGCGCAAAGAACCAGCCGGATTGCCCCAGTGGATAAATCAGGAATACG 9543681 Query 23982 GACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATT 24041 || || || ||||| || || ||||| || | ||| ||||| || || | | | || Sbjct 9543680 GAAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCACAATTGAA-C 9543622 Query 24042 AGA-CGTGCCAGTTCAAACTGACGTAA 24067 ||| || || ||||||| |||||||| Sbjct 9543621 AGACCGAGCAAGTTCAATTTGACGTAA 9543595 >seq3 Length=29620734 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 || |||||||| || || || | || | || |||||||||||||||||||| || | Sbjct 22065038 CACGAATAGCATGTAGCAGAGCCACACCTAATACTCCAGCAACTCCCATCATATGAAATG 22064979 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| ||||| || ||||| | |||| ||||| | ||| | || ||||| || | Sbjct 22064978 GGTTCGATGTCCAATTGTGAAATTCTTGGAAAAAGAGGATGAAGCGAAATATCGCTGCTA 22064919 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATA 23979 | ||||| ||| ||||||| | || || |||| ||||| || ||||||| Sbjct 22064918 CCATAAAACTTGGCACAAAGAAGAAGCCGGATTGCCCCAGTGGATAAATTAGGAATA 22064862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665473678168120