Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=21794218 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 907226 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 907285 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 907286 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 907345 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 907346 GCTCATCTCCCGCGACGAGGGCCTCCAC 907373 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| |||| || || ||||| ||||| ||||||||||| || || || Sbjct 6278969 CTTCGCCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTT 6278910 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || || ||||| ||||| ||||| || || Sbjct 6278909 CTGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGA 6278850 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 6278849 GCTCATCTCCCGCGACGAGGGCCTGCAC 6278822 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| ||||||| ||||| || | | ||| Sbjct 19066652 TTTGTGGAGATGTTTGTGGGTGTTGGTGCCTCCCGGGTTCGTGATCTTTTCAAGAAGGCC 19066593 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| || ||||| || || | |||| | Sbjct 19066592 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATAGATGCTGTTGGAAGGCAAAGA 19066533 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||| |||| || Sbjct 19066532 GGGACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAATCAGTTACTGACT 19066473 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 19066472 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGAGCT 19066413 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| ||| | || | || || |||||||| Sbjct 19066412 GATATCCTGGATTCCGCTTTACTCAGACCTGGACGTTTTGA 19066372 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/318 (66%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || ||||| ||||| || Sbjct 21503998 GGGGCCAAGATCCCCAAGGGATGCCTCCTCGTTGGCCCGCCCGGCACGGGGAAGACGCTG 21503939 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| | ||| | | Sbjct 21503938 CTGGCGCGTGCCGTCGCCGGGGAGGCCGGCGTGCCCTTCTTCTCCTGCGCCGCCTCGGAG 21503879 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || ||||| || || ||||| | || || || || | ||| Sbjct 21503878 TTCGTCGAGCTCTTCGTCGGTGTCGGCGCGTCCAGGGTGAGGGACCTGTTCGAGAAGGCC 21503819 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || ||||| ||||| |||||||| || || || || | ||| || Sbjct 21503818 AAGGCCAAGGCGCCTTGCATTGTGTTCATCGATGAGATCGACGCCGTCGGGAGGCAGCGT 21503759 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || | | | || | ||| || ||||| || || || || || || || || | Sbjct 21503758 GGTGCGGGGCTCGGAGGC--GGAAACGATGAGAGGGAGCAGACCATCAACCAGCTCCTGA 21503701 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 21503700 CGGAGATGGATGGATTTG 21503683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596551024314080