Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq8 95.1 1e-14 seq2 84.2 2e-11 >seq1 Length=33916305 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155 || ||||||||||||||||||||| || |||||| ||||||||||| ||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215 || || || || | || || ||||| | | | | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 166216 GGTAGTTTCTCTGATG 166231 || ||||||||||||| Sbjct 8033748 GGAAGTTTCTCTGATG 8033733 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/244 (69%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 167329 TTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC-GCCTGATTGGTATCCG 167387 ||||| || || ||| |||| | | || ||||||||||||| | ||| | | || Sbjct 14419110 TTTGCACTAATATGTTGCATGTTACATCAATTTGAACTTGCTCAGTCTGTTCAATTTCAA 14419051 Query 167388 TCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCT 167447 || | ||||| ||| | |||| |||||| | | | | | ||| ||| |||| | Sbjct 14419050 -CCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTATTTGTGTTTCCGTATTCCCGAT 14418992 Query 167448 CTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGC--CGCCATC 167505 |||| || || ||| || ||||||||||| || || || || || | ||| Sbjct 14418991 TGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAAATTTTGGCGTAGCAATGGTATC 14418932 Query 167506 TTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACT-GAATCCATTTCATAT 167564 || ||||| ||||||| ||||| |||| || ||||||||| | || ||||||||||| Sbjct 14418931 TT--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTGGACATTATAACCCATTTCATAT 14418874 Query 167565 GATG 167568 |||| Sbjct 14418873 GATG 14418870 >seq8 Length=18224760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 166597 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTCG 166655 ||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 166656 TGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCA 166715 ||| | || || ||||| ||| | | |||| ||| ||| |||| |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 166716 TGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCT 166755 || ||||| || ||||||||||| || ||||| ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 167470 TGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAA 167529 |||||||||| ||| || ||||| || || || || ||| | |||||||| ||||| Sbjct 15457024 TGGTTCTTTGTGCCGAGTTTTGGAGT-GCAGCAATATTTTGATCCATCCTCTTCTTCCAA 15456966 Query 167530 GGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGT 167573 ||||| ||||| |||| | |||||||||||||||||||| || Sbjct 15456965 GGATTTCACAATTGGAAGTTAAATCCATTTCATATGATGGGAGT 15456922 >seq2 Length=27082872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179 ||| ||| |||||||||||||||| || ||||| ||| ||||||| || ||||||||| Sbjct 10948104 TCCGTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAG 10948162 Query 18180 GTTCAAATCCTACCTGGGGAG 18200 |||| |||||||| |||| || Sbjct 10948163 GTTCGAATCCTACTTGGGAAG 10948183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561230524140400