Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 2e-12 seq1 86.0 2e-12 seq6 82.4 2e-11 >seq8 Length=18224760 Score = 86.0 bits (94), Expect = 2e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 42058 TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCT-GCTGATG 42116 || ||||||||||||| | || || ||||| || ||||||| | | || | || | | Sbjct 4907502 TAGCATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATTTGT---AGTTAGCCAAAG 4907446 Query 42117 GACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGA 42176 | || || || || || |||||||| || | |||| ||| || ||||| || || | Sbjct 4907445 GTCATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAA 4907386 Query 42177 TGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 |||| || || || || ||||||||||| || ||||| || Sbjct 4907385 TGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 >seq1 Length=33916305 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| ||| Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 8033810 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || ||||||| ||| || ||||| ||| || | ||| | |||| || |||| || Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 41680 GGGCTCTTTTTCTGATGCTATG 41701 || ||| ||||||| |||| Sbjct 8033749 AGGAAGTTTCTCTGATGGTATG 8033728 >seq6 Length=21794218 Score = 82.4 bits (90), Expect = 2e-11 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 41919 CTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCT 41978 |||| | |||||| || ||||| || |||||||| | | |||||| | |||||||||| Sbjct 13078197 CTTATATTATTGTGGCCGCTCATGGTTATTTTGGCTGATTAATCTTC-AGTATGCTAGCT 13078255 Query 41979 TTAATAATTCCCGTAGTCTTCATTTCTTTCTTG-CTGCCTGGCCTGTTGTAGGTATTTGG 42037 |||| || |||||| | | || ||| |||||| | || || | || ||||| |||||| Sbjct 13078256 TTAACAACTCCCGTTCTTTACACTTC-TTCTTGACCGCTTGATCAGTAGTAGGGATTTGG 13078314 Query 42038 TTTGCT 42043 ||| || Sbjct 13078315 TTTACT 13078320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146210074886664