Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq8 80.6 8e-11 >seq8 Length=18224760 Score = 80.6 bits (88), Expect = 8e-11 Identities = 116/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 43111 AGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAG 43170 |||| ||||| || ||| | || || || || || ||||||| |||| | || || Sbjct 4907504 AGTAGCATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAA 4907448 Query 43171 AA-TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGT 43229 | |||||| || ||||||||||||||| | || | ||| || ||||| || || Sbjct 4907447 AGGTCATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGT 4907388 Query 43230 GATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 |||||||| || ||||| || |||||||| || || || || Sbjct 4907387 AATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143528554210068