Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq8 127 2e-24 seq1 86.0 7e-12 >seq8 Length=18224760 Score = 127 bits (140), Expect = 2e-24 Identities = 124/159 (78%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 155797 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAA 155856 ||||| |||||||| ||||| ||||| |||||||| | |||||| || | ||| | Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATTTGTAGTTA--GCCAAAGGTCAT 4907441 Query 155857 GTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCAC 155916 || || ||| ||||| || || | |||| ||| |||||||| ||||||||||||| Sbjct 4907440 GTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCAC 4907381 Query 155917 GAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 || ||||| ||||||||||||||||| ||||| ||| || Sbjct 4907380 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 111 bits (122), Expect = 2e-19 Identities = 136/187 (73%), Gaps = 13/187 (7%) Strand=Plus/Minus Query 155081 CTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATG 155140 |||| ||||| |||| ||||||||||||||||| || || || |||||||| | || | Sbjct 9460993 CTGCCCCTCCAATAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTACG 9460934 Query 155141 GTAACAACATCATCTC---TGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACT 155197 | ||||| || ||||| |||||| || | |||| ||| || || || | ||| Sbjct 9460933 GAAACAATATTATCTCTGTTGGTGCCATTATTCCTACTTCTGGGGCGATCGGATTGTACT 9460874 Query 155198 TCTATCCTATTTGGGAAGC----------AGCAACTCTTGATGAGTGGTTGTACAATGGT 155247 | || || ||||| ||||| ||| || ||||||||||||| ||||||||| Sbjct 9460873 TTTACCCAATTTGAGAAGCTGCATCTGTTTGCATCTGTTGATGAGTGGTTATACAATGGT 9460814 Query 155248 GGTCCTT 155254 ||||||| Sbjct 9460813 GGTCCTT 9460807 >seq1 Length=33916305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| |||||||||| || |||||| || |||||||||||||| ||||||||| Sbjct 8033862 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 8033803 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 ||||| | || | ||||| || | ||| | |||| ||| | |||||||| | Sbjct 8033802 TCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAAGGAAGT 8033743 Query 155422 TTCTCTGATG 155431 |||||||||| Sbjct 8033742 TTCTCTGATG 8033733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584816989693960