Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq8 104 7e-18 >seq8 Length=18224760 Score = 104 bits (114), Expect = 7e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||| || Sbjct 4907342 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAG 4907401 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||| | | ||||||||||||| || || | ||| || || ||||| Sbjct 4907402 ATTAGCATGGTTGATGATATCAGCCCAAGTATTTATAACATGACCTTTGGC--TAACTAC 4907459 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCAT 40687 | ||||| || || || || || ||||| |||||||| Sbjct 4907460 AAATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCAT 4907498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698149193194