Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq8 109 6e-19 seq1 87.8 2e-12 >seq8 Length=18224760 Score = 109 bits (120), Expect = 6e-19 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 || ||| ||||| ||||||||||||||||| ||||| |||||||| |||||| | ||||| Sbjct 4907342 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAG 4907401 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGAC 67477 || ||| | ||| || ||||||||| || || | || | | | ||| || Sbjct 4907402 ATTAGCATGGTTGATGATATCAGCCCAAGTATTTATAACATGAC--CTTTGGCTAACTAC 4907459 Query 67478 GGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCAT 67516 |||||||||| ||||| ||||| |||||||| ||||| Sbjct 4907460 AAATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCAT 4907498 >seq1 Length=33916305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 67884 TCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACT 67943 ||||||||| |||||||| | ||| || | |||||| | || || || | || Sbjct 8033735 TCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGCTGCAACA 8033794 Query 67944 GGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCAC 68003 ||||||| ||||| ||| ||||||||||||||||| |||||| || ||||||||| Sbjct 8033795 AGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCAC 8033854 Query 68004 TGACGACC 68011 | |||||| Sbjct 8033855 TCACGACC 8033862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566929546681560