Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 seq1 91.5 2e-13 >seq8 Length=18224760 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 16/201 (8%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 || ||| ||||| |||||||||||||| || ||||| || ||||| |||||| |||| | Sbjct 4907342 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAG 4907401 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACC-----AGAACTATCA 67953 | ||| |||||| | || ||||| ||| | ||| | ||| ||||| || Sbjct 4907402 ATTAGCATGGTTGATGATATCAGCCCAAGTATTTATAACATGACCTTTGGCTAACTA-CA 4907460 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACC--AA 68011 | | |||||||| ||||| || || |||||||| |||||| | |||| ||| || Sbjct 4907461 A------ATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATGCTACTAATACCTAAA 4907514 Query 68012 GTGC--AGTGAACCAGATACC 68030 | || ||||||||| |||| Sbjct 4907515 GCGCATAGTGAACCATGTACC 4907535 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/187 (71%), Gaps = 13/187 (7%) Strand=Plus/Plus Query 68540 AAGGACCACCATTGTACAACCACTCATCAAGGGTTGCT----------GCTTCCCAAATG 68589 |||||||||||||||| ||||||||||||| | ||| ||||| ||||| Sbjct 9460807 AAGGACCACCATTGTATAACCACTCATCAACAGATGCAAACAGATGCAGCTTCTCAAATT 9460866 Query 68590 GGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCA---GAAATGATG 68646 || ||||||| | || || || ||| |||||| || |||||| || || || Sbjct 9460867 GGGTAAAAGTACAATCCGATCGCCCCAGAAGTAGGAATAATGGCACCAACAGAGATAATA 9460926 Query 68647 TTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGG 68706 ||||| || || || | |||| || |||||| |||||||||||||| || || | || Sbjct 9460927 TTGTTTCCGTAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTATTGGA 9460986 Query 68707 GGAGCAG 68713 || |||| Sbjct 9460987 GGGGCAG 9460993 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 67044 ACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGG 67103 || |||||||||||||| || || || |||| || || |||||||| | |||||| | | Sbjct 15456922 ACTCCCATCATATGAAATGGATTTAACTTCCAATTGTGAAATCCTTGGAAGAAGAGGATG 15456981 Query 67104 AATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGA 67163 ||| ||| ||||||| || || ||| || | || ||||||| ||||| ||| | Sbjct 15456982 GATCAAAATATTGCTG-CACTCCAAAACTCGGCACAAAGAACCAACCAGATTGCCCCGGT 15457040 Query 67164 GGGTAGATGAGAAAGACACTAACAAAA-ACAGCGA 67197 || | || || || ||| ||||||| |||||| Sbjct 15457041 GGATTAATTAGGAATACAGAAACAAAAGGCAGCGA 15457075 >seq1 Length=33916305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/266 (69%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 67049 CATCATATGAAACGGGTTC-AAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATC 67107 |||||||||||| ||||| || ||||||||||| |||| ||| | |||||| ||||| Sbjct 14418870 CATCATATGAAATGGGTTATAATGTCCAGTTATGAAATCTTTGGAAGAAGAGGGCGAATC 14418929 Query 67108 GAAAGATTGC--TGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGG 67165 ||||| | || || || ||| ||| || || |||||| | | ||| || || || Sbjct 14418930 --AAGATACCATTGCTACGCCAAAATTTGGTGCAAAGAACCAATTGGGTTGCCCTAGTGG 14418987 Query 67166 GTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTA 67225 | || | || || |||| ||| | | |||||| |||||| ||| ||||| | Sbjct 14418988 ATCAATCGGGAATACGGAAACACAAATAATAGTTGGACCAAAGAACGAAATTGCATTACA 14419047 Query 67226 GGGACGGATACCGATGAGAC-GTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAG 67284 || || | || |||| | || |||||||| || | | |||| ||| ||||| | Sbjct 14419048 AGG-TTGAAATTGAACAGACTGAGCAAGTTCAAATTGATGTAACATGCAACATATTAGTG 14419106 Query 67285 CGAAAGCCCCGTGGAGCGCCACAAAA 67310 | ||| |||| | ||| || | |||| Sbjct 14419107 CAAAATCCCCAT-GAGAGCAAAAAAA 14419131 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68365 TCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACA 68424 |||||||| |||||||| | ||| || | || ||| | | | || ||||||||| Sbjct 8033735 TCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGCTGCAACA 8033794 Query 68425 GGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCAT 68484 | ||||| ||||||||| ||||||||||||||||| ||||| | |||||||| Sbjct 8033795 AGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCAC 8033854 Query 68485 TCACGTCCCATGTA 68498 ||||| ||||| || Sbjct 8033855 TCACGACCCATATA 8033868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572036587656120