Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 154 4e-32 seq7 125 2e-23 seq6 113 1e-19 seq1 102 2e-16 seq3 84.2 6e-11 >seq8 Length=18224760 Score = 154 bits (170), Expect = 4e-32 Identities = 241/341 (71%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || || |||||| | |||||| ||||||||| ||| | | || ||| Sbjct 2256547 TTTCTCACAGTACCATCATACTTCACCATAATATCTTCCATAGCCTTCACAAGTCGCCGC 2256606 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || ||||| ||||| ||| || || ||||| |||||||| ||||| | | ||||||| Sbjct 2256607 TGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACCC 2256666 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | |||| ||| || |||| || | ||| |||| || || Sbjct 2256667 ATAGCATGGAAGAAAAATTCTTGTGGTGTCAGGCCCCGAAGGTAAGAGTTCTCCACAAAT 2256726 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCAT 302776 ||||| || || || ||| || || ||||| |||| || | | || | | Sbjct 2256727 CCACGACTTTCAGGACCATAGTCATCTTTTGTGAAGTGAGGCAATGTTC-GATCGATGA- 2256784 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| || | Sbjct 2256785 AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCAACACAAGCAGTCATTTGTG 2256844 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||||| | |||||| || ||||| ||| | |||||| Sbjct 2256845 AAATATTGATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 2256885 >seq7 Length=18603524 Score = 125 bits (138), Expect = 2e-23 Identities = 235/342 (69%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 8650632 ATTTCTTACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 8650573 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || || || ||||||| ||||| | | |||||| Sbjct 8650572 CTGGATATATCCAGTCTCAGAGGTCTTCACGGCAGTATCAACCAGACCTTCTCTACCACC 8650513 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| |||| || || | || | |||||||| || || Sbjct 8650512 CATAGCATGAAAGAAAAATTCTTGCGGTGTCAGGCCTCGAAGGTAAGAGCTCTCCACAAA 8650453 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || | ||| || | ||||| |||| || | | | | | Sbjct 8650452 CCCACGACTTTCAGGACCGTAGTCACCTTTCATGAAGTGGGGCAATGTTC-GACCGATGA 8650394 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | ||| || Sbjct 8650393 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGCCATTTGT 8650335 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | | |||| || ||||| || |||||||| Sbjct 8650334 GAAATATTGATGAAAGTGCCTTTTGAGCCTGCGGTTACCATA 8650293 >seq6 Length=21794218 Score = 113 bits (124), Expect = 1e-19 Identities = 322/475 (68%), Gaps = 24/475 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| |||||||| || || || |||| ||||| ||||| ||| | | ||| || Sbjct 19066408 ATATCAGCTCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 19066463 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | || || ||||||||||||||| ||| | | Sbjct 19066464 ATCCATCTCAGTCAGTAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCAC--CA 19066521 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || || |||| | ||||||||||| ||||| |||| || | | || Sbjct 19066522 AT-ACCTG--TCCCT-CTTTGCCTTCCAACAGCATCTATTTCATCAACAAATACTATGCA 19066577 Query 289065 CGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 |||| ||| | | || ||| ||| | || | || ||||| || |||| ||| Sbjct 19066578 AGGAGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACCCGGGAGGCACCAACACCC 19066635 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181 ||| |||| || ||||| ||||| | |||| | || | || | |||| ||||| || Sbjct 19066636 ACAAACATCTCCACAAACTCAGATCCTGATA-TCGAGAAAAACGGTACACCAGCTTCTCC 19066694 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241 ||| | ||| | || || | |||||||| |||||||| || || | | ||||| || Sbjct 19066695 TGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACC 19066754 Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 ||| || | || ||| ||| | | | || || |||| | || || || | Sbjct 19066755 CTTAGGGATGCGAGCACCAACAGCGGTGAACCTTTCTGGTTTCTTCAGGAACTCAACCAC 19066814 Query 289302 TTCC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 |||| | ||| || | |||||| ||||| ||| || || |||||| ||||||||| Sbjct 19066815 TTCCATGAAG-TCTTGTTTTGCTTCATCGACA-CCAGCAACATCATCAAAAGTAA 19066867 Score = 98.7 bits (108), Expect = 3e-15 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| ||| ||||| ||||| || ||||| | |||||| |||| || Sbjct 2575457 TACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTA 2575398 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 ||||||||| ||| |||||||| || ||||| ||||| || |||| Sbjct 2575397 GCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCTCGGATAT 2575353 >seq1 Length=33916305 Score = 102 bits (112), Expect = 2e-16 Identities = 216/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| |||||||| | | | || ||| || | || | Sbjct 27964941 ACCAATTGCATCAATTTCATCAATGAACACAATGCTAGGTGAACACTGCCGAGCTTGTTG 27965000 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| | | || | ||||| ||| | ||||||| ||||||| | || || ||| | Sbjct 27965001 AAATAAGTTCCGCACCCTGGATGGTCCGACACCAACAAACATTTCCATGAAGTCTGAACC 27965060 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || | ||| | ||| | || ||||| || |||| || ||||||| Sbjct 27965061 AGA-AATAGATAAGAAGGGCACACCAGACTCTCCTGCAGTAGCTTTCGCAAGGAGTGTCT 27965119 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| ||||| || || | | ||| | |||||||||| |||||| ||||| | Sbjct 27965120 TTCCTGTGCCAGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAGTTG-T 27965178 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||||| || | || | || | |||| |||| || ||| | ||| || ||| Sbjct 27965179 TCATATTTCTTCGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCTTCA 27965238 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 27965239 TCACAGCCAGCTACATC 27965255 >seq3 Length=29620734 Score = 84.2 bits (92), Expect = 6e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| ||||| || | ||| |||||||| ||||| |||||| | || ||| | Sbjct 20105444 GCAATAAGCCCACATTTCTCACATACATGGACTCTGTATGCATCACTTTGATCGAATAAC 20105385 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| ||| | ||| || || | |||||| || || | |||||| || ||| Sbjct 20105384 CTTTCCTTTAGGAAAAATGCTGCGCCATGAGCAATCATGCAGTCCCTCTCCATCTCTCCG 20105325 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || || ||||||||||| |||| | ||||| ||||| || Sbjct 20105324 AAGCGGAGACCACCATCACGAGAGCGCCCCTCTGCAGGTTG 20105284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471770625561467