Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 seq1 87.8 2e-12 >seq8 Length=18224760 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 158408 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTCG 158466 ||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 158467 TGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCA 158526 ||| | || || ||||| ||| | | |||| ||| |||||||| |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 158527 TGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566 || ||||| || ||||||||||| || ||||| ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 159717 GTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTG 159776 || ||||| || | ||| ||| || || ||||||| || | ||| ||||| ||| Sbjct 15457057 GTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGAGTG 15456998 Query 159777 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCC 159836 ||||||| ||| ||| | | | ||| | |||||||||||||| |||| ||||||||| Sbjct 15456997 -CAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAGTTAAATCCA 15456939 Query 159837 TTCCATATGATGGGAGTT 159854 || ||||||||||||||| Sbjct 15456938 TTTCATATGATGGGAGTT 15456921 >seq1 Length=33916305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 || ||||| |||||||||||||| | |||| | |||||||| || ||||| ||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 ||||||||||||| || || || || || || | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 158027 GGTTCTTTCTCCGATGCTATG 158047 || |||||| |||| |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATG 8033728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548357324992120