Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq8 111 2e-19 seq1 111 2e-19 seq3 87.8 2e-12 >seq8 Length=18224760 Score = 111 bits (122), Expect = 2e-19 Identities = 145/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 151634 GGTATCTGGTTCACT--GCACTT--GGTGTCAGCACCATGGCATTCAACCTGAACGGTTT 151689 |||| ||||||||| || ||| ||| | || | |||||| |||||||| ||||| || Sbjct 4907535 GGTACATGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATT 4907476 Query 151690 CAACTTCAACCAGTCCATCATGGATGGTCAG-GGCAAAGTCCTGAACACCTGGGCAGACG 151748 ||| |||||||| | | | | | | || || | || | || || ||||| || Sbjct 4907475 CAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATA 4907419 Query 151749 TTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 151808 | | |||| ||| ||| |||| |||||| |||||||| ||||||||||||||||||| Sbjct 4907418 TCATCAACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCC 4907359 Query 151809 CTCTCGACCTTGCTGCT 151825 |||| ||||| ||| || Sbjct 4907358 CTCTAGACCTAGCTACT 4907342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 152765 TCGCTGT-TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTC 152823 |||||| ||||||| || || || || | || | ||| ||||| ||||||| || Sbjct 15457075 TCGCTGCCTTTTGTTTCTGTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTT 15457016 Query 152824 GCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCAC 152883 | || ||| || || |||||||| || ||| | | |||||| | |||||||| ||| Sbjct 15457015 GTGCCGAGTTTTGGAGT-GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCAC 15456957 Query 152884 AACTGGACATTGAATCCGTTTCATATGATGGGTGTT 152919 || |||| || ||||| |||||||||||||| ||| Sbjct 15456956 AATTGGAAGTTAAATCCATTTCATATGATGGGAGTT 15456921 >seq1 Length=33916305 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 151165 TTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-G 151223 ||| ||||||||||||||||||||| || ||| ||||||||||||| ||||| ||| | Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 8033811 Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 ||||||| ||||||| ||||| ||||| | | | | ||| | | || ||| | |||| Sbjct 8033810 TTGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTC 8033751 Query 151284 AAGGTTCTTTCTCTGATG 151301 |||| ||||||||||| Sbjct 8033750 AAGGAAGTTTCTCTGATG 8033733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/266 (70%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 152652 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACT 152711 |||| | || ||| | |||| ||| || ||||| ||| |||| | | || |||||||| Sbjct 14419131 TTTTTTTGCTCTC-ATGGGGATTTTGCACTAATATGTTGCATGTTACATCAATTTGAACT 14419073 Query 152712 GGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 152770 || | |||| || | || || | ||||| ||| |||||| |||||| | | Sbjct 14419072 TGCTCAGTCTGTTCAATTTCAA-CCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTA 14419014 Query 152771 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 152830 ||| |||| ||| || | || | || || || ||| | | |||||| || || ||| Sbjct 14419013 TTTGTGTTTCCGTATTCCCGATTGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAA 14418954 Query 152831 CTTTCGGGGTCGCA--GCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTG 152888 ||| || || ||| | ||||| ||||| |||||| | ||| |||| || ||||| Sbjct 14418953 ATTTTGGCGTAGCAATGGTATCTT--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTG 14418896 Query 152889 GACATT-GAATCCGTTTCATATGATG 152913 |||||| || || |||||||||||| Sbjct 14418895 GACATTATAACCCATTTCATATGATG 14418870 >seq3 Length=29620734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054 |||||| |||||| | |||||||| ||| ||||| || || |||||| || Sbjct 28668158 GATGACACCTACATCCTTGATGCTGCCGAGACCGCCGGAGTGGAGCTGCCCTACTCATGC 28668217 Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114 |||||||| ||||| || | |||||||||||||||| | ||| || || || ||| Sbjct 28668218 CGTGCTGGAGCATGCTCTACCTGTGCTGGTAAGATTGAGGCTGGCACCGTCGACCAGTCG 28668277 Query 152115 GACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGT 152170 ||| |||||| | ||||||| ||| ||| ||| | |||||||| || || Sbjct 28668278 GACGGGTCATTCCTTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTGACATGCGT 28668333 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 152785 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCA 152844 || || || || || ||||| ||||| | | || || | ||| ||| ||| ||| Sbjct 22064864 TTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAGCA 22064923 Query 152845 GCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTT 152904 || || || || ||| | ||||| | |||| ||| ||||| ||||||| ||| || ||| Sbjct 22064924 GCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCATTT 22064983 Query 152905 CATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATG 152959 ||||||||||| ||||| || | || || | ||| |||| ||| |||| || Sbjct 22064984 CATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTATTCGTG 22065038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549605286132520