Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 1e-12 >seq5 Length=20131956 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| || ||||| ||| | |||||||| || |||||| |||| ||| || Sbjct 16284234 AATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTTGAGAGCTC 16284293 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || ||||| ||||| || ||| | ||| |||| Sbjct 16284294 A-GACACCATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 16284352 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | || || || ||||||||||||| | | || | || || |||| Sbjct 16284353 AGCAGAGACTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACA 16284412 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||| || || || ||||| | ||| | ||| Sbjct 16284413 ACATCCAGAAGGAGTCTACCCTCCACCTAGTG 16284444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829066516063