Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq2 89.7 4e-13 seq6 82.4 6e-11 >seq5 Length=20131956 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||||||||| ||||| ||| | || ||||| || |||||| |||| ||| ||| Sbjct 16284234 AATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTTGAGAGCTC 16284293 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || |||||| || || || ||| | ||| |||| Sbjct 16284294 A-GACACCATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 16284352 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | || || || ||||||||||| | | || | || ||||||| Sbjct 16284353 AGCAGAGACTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACA 16284412 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || ||||||||||| | ||| | ||| Sbjct 16284413 ACATCCAGAAGGAGTCTACCCTCCACCTAGTG 16284444 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || || || || || ||||| ||| | || |||| | | Sbjct 16284007 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTTGAGGTGGAGTCCTCC 16284066 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 16284067 GATACCATTGACAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 16284126 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || |||||||| ||||||| || || | || ||||||||| Sbjct 16284127 CAGCGTCTGATCTTTGCCGGCAAACAGCTCGAGGACGGCAGGACCCTAGCTGACTACAAC 16284186 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 16284187 ATCCAGAAGGAGTCCAC 16284203 >seq2 Length=27082872 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| || || ||| |||| |||| | Sbjct 2374204 ATGCAGATCTTTGTGAAGACACTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCT 2374145 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||||||| Sbjct 2374144 GACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 2374085 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||||| || || | |||||||||||| Sbjct 2374084 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCGGACTACAAC 2374025 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 2374024 ATCCAAAAGGAGTCAAC 2374008 >seq6 Length=21794218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || ||||| ||||| ||| | || |||| | Sbjct 19645715 ATGCAGATTTTTGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 19645774 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||| || || || ||| | ||| || ||| Sbjct 19645775 GATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 19645834 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||| | | || |||| ||||||||| Sbjct 19645835 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 19645894 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || |||||||| || | ||| ||||| |||| Sbjct 19645895 ATCCAGAAGGAGTCCACCCTTCACCTGGTGCTGAG 19645929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864690474299