Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq6 118 8e-22 seq2 87.8 1e-12 >seq6 Length=21794218 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| || ||||| || || || ||||| |||||||||| ||| || | Sbjct 19646841 CGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGCCCA 19646782 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | |||| | ||||| ||||| ||||||||||| ||| Sbjct 19646781 TCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTG 19646722 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| || || || || | || || Sbjct 19646721 TCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAAGGTGATG 19646662 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 19646661 GTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || || || |||||||| ||||| || Sbjct 18102178 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCCTTCTGAATGTTGTAATCAGC 18102119 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || ||||| || || ||| | |||| ||||||||||| || || Sbjct 18102118 TAATGTGCGTCCATCTTCCAGTTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGG 18102059 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 ||||||||||||||| || || Sbjct 18102058 AATACCCTCTTTGTCCTGAAA 18102038 >seq2 Length=27082872 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || || || || || ||||| || || || | ||| | ||| || || || Sbjct 2373774 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCCAGCTGC 2373833 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | || | | ||||||||||| || || ||||| ||||| || | || Sbjct 2373834 TTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 2373893 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||| | || | ||||||||| || || || || || ||||| |||||||| Sbjct 2373894 GCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTC 2373953 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || || |||||||| Sbjct 2373954 AGAGTCTTTACGAAGATCTGCAT 2373976 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || ||||| ||||| || ||||||| ||| | || || || || Sbjct 2374002 TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCCAGCTGC 2374061 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| ||| | || | | ||||||||||| || || ||||| ||||| || | || Sbjct 2374062 TTGCCGGCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTA 2374121 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||| | || | |||||||| || || || || || ||||| ||||| || Sbjct 2374122 GCCTTGACGTTATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTC 2374181 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| |||||||| Sbjct 2374182 AGTGTCTTCACAAAGATCTGCAT 2374204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207505106231