Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq8 100 3e-16 seq3 93.3 5e-14 seq1 84.2 2e-11 >seq8 Length=18224760 Score = 100 bits (110), Expect = 3e-16 Identities = 120/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 157878 CATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTC 157936 |||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTC 4907443 Query 157937 GTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 157996 ||| | || || ||||| ||| || | |||| ||| |||||||| |||||| |||| Sbjct 4907442 ATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGC 4907383 Query 157997 ATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158037 | || ||||| || ||||||||||| || || || ||| || Sbjct 4907382 ACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/185 (70%), Gaps = 13/185 (7%) Strand=Plus/Minus Query 157165 GCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGC 157224 || ||||| | ||||| || |||||||| || || ||| || ||||| | | || || Sbjct 9460991 GCCCCTCCAATAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTACGGA 9460932 Query 157225 AACAACATCATCTCTG---GTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTC 157281 ||||| || ||||||| |||| || ||||| |||| || ||||| | |||| Sbjct 9460931 AACAATATTATCTCTGTTGGTGCCATTATTCCTACTTCTGGGGCGATCGGATTGTACTTT 9460872 Query 157282 TACCCCATCTGGGAAGCAGCATCACTT----------GATGAGTGGCTTTACAACGGTGG 157331 ||||| || || ||||| ||||| || ||||||||| | ||||| ||||| Sbjct 9460871 TACCCAATTTGAGAAGCTGCATCTGTTTGCATCTGTTGATGAGTGGTTATACAATGGTGG 9460812 Query 157332 TCCTT 157336 ||||| Sbjct 9460811 TCCTT 9460807 >seq3 Length=29620734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 159201 TTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCC 159260 ||||| || || ||||| || || ||| | | || || | || ||| ||| || Sbjct 22064864 TTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAGCA 22064923 Query 159261 GCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTC 159320 || ||||| | ||| | ||||| | |||| || |||||||||||| ||||| || Sbjct 22064924 GCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCATTT 22064983 Query 159321 CATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTC 159380 |||||||||||||||||||| | |||||| || || ||| |||||||| || || Sbjct 22064984 CATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTATTCGTGAGGCA 22065043 Query 159381 ACAGTTGAAAA 159391 || || |||| Sbjct 22065044 ACTGTGCAAAA 22065054 >seq1 Length=33916305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 157378 TATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTT 157437 |||||||| |||||||||||||| || |||| | |||||||| || ||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 157438 GCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 157497 || || || || | || || ||||| | | | | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 157498 GGTTCTTTCTCCGATGCTATG 157518 || |||||| |||| |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATG 8033728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545256621543280