Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3 109 7e-19 seq1 91.5 2e-13 seq8 86.0 8e-12 >seq3 Length=29620734 Score = 109 bits (120), Expect = 7e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||||||||||||||||| || || || | || || |||||||| || |||||||| Sbjct 28668167 TACATCCTTGATGCTGCCGAGACCGCCGGAGTGGAGCTGCCCTACTCATGCCGTGCTGGA 28668226 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| ||||||||||||||||| | | | || || || || ||||| ||| ||| Sbjct 28668227 GCATGCTCTACCTGTGCTGGTAAGATTGAGGCTGGCACCGTCGACCAGTCGGACGGGTCA 28668286 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||||||||||| || | || ||| | | | |||| ||||| | ||||| | Sbjct 28668287 TTCCTTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTGACATGCGTCTCCTACCCTAAG 28668346 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGATGGAGTTT 138770 || || ||| | || | || | || || | || || |||| | || |||| Sbjct 28668347 TCGGACTGTGTCATCCACACCCACAAGGAAGGAGACCTTTACTAAGGGGGTTT 28668399 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 179363 TATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTG 179422 |||| || || || ||||| || |||||| | | ||||||| |||| ||| || | Sbjct 22064862 TATTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAG 22064921 Query 179423 CGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCT 179482 | ||||| ||| | ||| | || || || |||| || ||||| |||||| ||||| | Sbjct 22064922 CAGCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCAT 22064981 Query 179483 TTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAG 179542 |||| |||||||||||||| || | | |||| |||||||| |||||||| || | Sbjct 22064982 TTCATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTATTCGTGAGG 22065041 Query 179543 TAACTGT 179549 |||||| Sbjct 22065042 CAACTGT 22065048 >seq1 Length=33916305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 |||||||| |||||||||||||| | |||||| |||||||| || ||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| ||||| | ||||||||| || | | | ||||| | | || ||| | ||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTAT-TTTCTTGATTTACCCTATTGGTCA 8033750 Query 178004 AGGTTCATTCTCCGATGCTATG 178025 ||| ||||| |||| |||| Sbjct 8033749 AGGAAGTTTCTCTGATGGTATG 8033728 >seq8 Length=18224760 Score = 86.0 bits (94), Expect = 8e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 179353 TTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCG 179412 || ||| |||||| || || | |||| || ||||| |||||||||||| ||| Sbjct 15457066 TTTGTTTCTGTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGT 15457007 Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472 ||||| || || || || ||| ||| | | || ||||| ||||| || ||||| |||| Sbjct 15457006 TTTGGAGT-GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAG 15456948 Query 179473 CTCAACCCCTTTCACATGATGGGAGTT 179499 | || || ||||| |||||||||||| Sbjct 15456947 TTAAATCCATTTCATATGATGGGAGTT 15456921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605648341037560