Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 8e-12 >seq3 Length=29620734 Score = 86.0 bits (94), Expect = 8e-12 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 201625 || |||||| ||||||||||||| ||| || | || |||| || ||||||||| ||| Sbjct 20104681 CGCATACCACAAATTGGAGATAAGTTTAGTAGTAGGCATGG-TCAGAAAGGAACTGTTGG 20104739 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCG--GGTATGACCCCGGATATT 201683 |||| |||| |||| || || |||||| | || || | || || || || |||||| Sbjct 20104740 AATGACTTATACACAGGAGGACATGCCG--TGGACTATTGAAGGCATCACACCTGATATT 20104797 Query 201684 ATAATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTGCAACTGTT 201743 || | |||||| || ||| || || | ||||| || ||| | |||| | || Sbjct 20104798 ATTGTGAATCCACATGCTATTCCGTCCCGTATGACTATTGGTCAGCTGATTGAGTGTATT 20104857 Query 201744 ATGGGTAAA 201752 ||||||||| Sbjct 20104858 ATGGGTAAA 20104866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655259596219000