Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 >seq3 Length=29620734 Score = 102 bits (112), Expect = 1e-16 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 192954 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 193012 ||||||| ||| | || |||||| || | |||||| || ||||| |||| || || Sbjct 20104642 GATGGTTTAAGATTTGTGAAAGTTAGAATGCGATCAGTT-CGCATACCACAAATTGGAGA 20104700 Query 193013 TAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 193071 ||| ||| || || |||| | | ||||||||| ||| |||| |||| |||| || | Sbjct 20104701 TAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTTGGAATGACTTATACACAGGAGG 20104759 Query 193072 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTC 193131 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 20104760 ACATGCCGTGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 20104819 Query 193132 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 193178 ||||| | ||||| ||| ||| | |||| | ||||||||||| Sbjct 20104820 CGTCCCGTATGACTATTGGTCAGCTGATTGAGTGTATTATGGGTAAA 20104866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628511629109760