Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 150 1e-30 seq11 134 1e-25 seq12 109 4e-18 seq5 89.7 4e-12 seq9 87.8 1e-11 seq8 86.0 5e-11 >seq3 Length=29620734 Score = 150 bits (166), Expect = 1e-30 Identities = 526/814 (65%), Gaps = 13/814 (2%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | || ||||| || || | |||||||||||| ||||| ||||||| |||| | Sbjct 28048068 GTCATGACTCCTCCAGCAGTCTCAAGACCAAGAGAAAGTGGAGTCACATCAAGGAGGAGA 28048009 Query 281723 ATATTTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | || || | || |||| | | || | | ||||| || || | |||| |||| Sbjct 28048008 AGATCCTGCACCTTCTCATTCCCCCTCTCCGCTATGGATAGCAGCCTGGACAGCAACACC 28047949 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 ||||| | |||||||||||| |||| | | | ||||| || ||| ||| || | Sbjct 28047948 GTATGCCATAGCTTCATCAGG-TTAATGCTCTTACATAGTTCCTTCCCACCGAAGAAGTC 28047890 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 |||||||| ||| | ||||| | || ||| || ||||| | |||| ||||| Sbjct 28047889 CTGCAGAAGTTGCTGAACCCTGGGAATCCTAGTTGAACCACCAACAAGGACAACATCATG 28047830 Query 281902 CACCTGTGATT-TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 | ||| | | |||| |||| |||| | ||| || | || || | | Sbjct 28047829 GATA-GTGCTCCTGTCCATCTTTGCATCCCTCAGGCATTTCTCCATAGGCTCCATGCATT 28047771 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 || || | ||| ||| || || || | ||||| || | ||| || ||| Sbjct 28047770 TCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATGGTGGAATATAAAT 28047711 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 |||| || || || | ||||||| |||||| ||||| || | | || || |||| | Sbjct 28047710 CAATACCCTCAAATAGGGAATCAATTTCAATGGTAGTCTGGGCTGTGGATGAGAGTGTCC 28047651 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAAT 282140 || || | ||||||| ||| || || | | || || | | | | | | || Sbjct 28047650 TCTTTGCCCTCTCACATGATGTTCTGAGATTCCTCAACGCCATGGGGTTTCCACTGATAT 28047591 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 | | |||| ||||||||||| || ||| | | || || | || ||||| | Sbjct 28047590 CCTTCTTATGCTTTCTCTTGAACACTCGGACAAAGTGGTTCACCAGGCAGTTGTCAAAGT 28047531 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 | || || || | | ||| | || | || ||| | || | |||| || || |||| Sbjct 28047530 CCTCTCCACCAAGGTGAGTGTCACCAGTTGTTGCTTTCACCTCAAAAATACCCTCCTCAA 28047471 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | | || | ||||| || |||||| | |||||||| || |||||| | | Sbjct 28047470 TGGTGAGCAGGGAGACATCGAAAGTACCACCA---AGGTCAAAAATGAGCACATTCTTCT 28047414 Query 282321 CTTTGTC-TTGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 | | ||||| | || ||||||||||| |||| |||||||| ||||| || | Sbjct 28047413 CACCAACATTGGTCACCTTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGCTCGT 28047354 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 |||| || | || |||||||||||| |||| || ||||| ||||| || || || | Sbjct 28047353 TAATGATACGCATAACATTAAGACCCACAATAACACCAGCATCCTTAGTTGCCTGCCTCT 28047294 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAAC 282468 | ||||| || || || ||||| ||||| | ||| Sbjct 28047293 GAGAATCATTGAAGTAAGCAGGGACAGTGACAAC 28047260 >seq11 Length=16001410 Score = 134 bits (148), Expect = 1e-25 Identities = 676/1064 (64%), Gaps = 26/1064 (2%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||| || || |||||||||||||| | ||||| || || ||||| || Sbjct 15793697 GCAGACACGTTCAGGATACCATTGGCATCAATGTCAAAGCAAACAGTGATCTGAGGAACA 15793638 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || ||| ||||||| ||||| || | | ||| | ||||| || || || Sbjct 15793637 CCCCTCGGAGCAGGAGGGATGCCAGAGAGCTCAAACTTGCCCAGCAGGTTGTTGTCACGT 15793578 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | |||||||| ||| ||||| || ||| || || || || || Sbjct 15793577 GTCCTAGTCCTCTCACCCTCATAAACCTGGATGAGGACACCAGGCTGGTTGTCGGAGTAG 15793518 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATAT 281660 || | ||| || ||| || || || || || ||||| || ||||| | Sbjct 15793517 GTGGAAAAGAC-CTGCTCCTTCTTGGTGGGGATGGTGGTGTTCCTCGGGATCAAGAC--- 15793462 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 |||||| | ||||||||| || || ||||| |||||||| || || ||||| | |||| Sbjct 15793461 -GGTCATGACACCACCAGCAGTCTCCAAACCCAGAGAAAGCGGGGTAACATCCAAGAGGA 15793403 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | | || | || || | | |||| || || || || || | |||||||| Sbjct 15793402 GGAGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAGGATGGCAGCCTGGACAGCAGCAC 15793343 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 ||||||||||||| ||||| || || | | | || | || || ||||| || | Sbjct 15793342 CATATGCAACAGCCTCATCTGGGTTGATGTTCTTGCAAAGCTCCTTGCCGTTGAAGAAGT 15793283 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||| || || ||| | || || | || || || ||||| | |||| |||| Sbjct 15793282 CCTGAAGGAGCTGCTGCACCCTTGGGATCCTAGTGGAGCCACCAACAAGAACAACATCAT 15793223 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCA 281959 | || ||| | || |||| || | |||| | | || || || || || | || Sbjct 15793222 GAACA-GTGCTCTTGTCCATCTTAGCATCCCTGAGACACTTCTCCACAGGCTCCATACAC 15793164 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 || || | || || || || ||| | || | || | ||| | | || || Sbjct 15793163 TTCCTGAAGAGATCCATGTTGAGCTCCTCAAATCTGGCACGGGTGATAGT-AGAGTAGAA 15793105 Query 282020 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 |||||||| || ||| ||||| | ||||| || || || | | || || || | Sbjct 15793104 GTCAATTCCCTCATACAGGGAATCGATCTCAATGGTGGTCTGGGCAGTGGAGGAGAGGGT 15793045 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTC 282136 | || || | ||||| |||||||| | ||| | | || | | | ||| | | Sbjct 15793044 CCTCTTCGCCCTCTCACAGGCTGTCCTCAATCTCCTGAGAGCCCTGG--GGTTGCCAGTG 15792987 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 | ||| | || | || |||||||| |||| ||| | | || | ||| || ||| Sbjct 15792986 ATATCCTTCTTGTTCTTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATACGGTTGTCA 15792927 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 ||||||||||| || | | ||| | || | || || | || | || | || || Sbjct 15792926 AAATCTTCACCACCAAGGTGAGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCTTCC 15792867 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 |||| | | || | |||||| ||| || || || | ||||| || || |||||| Sbjct 15792866 TCAATTGTAAGGAGGGAGACATCAAAGGTACCGCCTCCAAGGTCAAAGATGAGGACATTC 15792807 Query 282317 ATTTCTT------TGTCTTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | || || || | || || ||||||||||| |||| ||| ||||| || || Sbjct 15792806 TTCTCACCAACACTG-CTAGCCTTCTTGTCAAGACCATATGCAATAGCTGCAGCGGTGGG 15792748 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 || || || || | || ||||| ||||||||||| ||| ||||| || ||||| || Sbjct 15792747 CTCGTTGATGATACGCATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTG 15792688 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || ||||||||||| | ||| |||| Sbjct 15792687 CCTCTGAGAGTCATTGAAGTAAGCAGGAACAGTGACAACAGCAT 15792644 >seq12 Length=15318893 Score = 109 bits (120), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG-- 282331 |||||| ||| |||||||| | ||||| || || |||||| | || | ||| Sbjct 12385841 ACATCAAAGGTACCACCACCAAGGTCAAAGATGAGAACATTCTTCTCACCAACGCTGGAA 12385782 Query 282332 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || |||||||||||||| |||| ||| |||||||| || || || || || | || Sbjct 12385781 GCCTTCTTATCAAGACCATAGGCAATAGCTGCAGCAGTAGGCTCGTTGATGATACGCATG 12385722 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| || |||||||| || ||||| || ||||| || || ||||| || || || Sbjct 12385721 ACATTGAGGCCAGCAATGACACCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCATTGAAG 12385662 Query 282449 TATGCAGGAACAGTAATAACGGCAT 282473 || |||||||| || | ||| |||| Sbjct 12385661 TAAGCAGGAACTGTCACAACAGCAT 12385637 Score = 93.3 bits (102), Expect = 3e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 || ||| ||| || || |||| ||||| | ||| | | |||| |||| || | Sbjct 5033574 ACGTCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TTGTTTCATTGTTTT---TC 5033521 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | ||||||||||| ||||| ||||| | | ||| | Sbjct 5033520 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 5033461 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || || || | ||| |||||||| || ||| ||| ||||| || || || ||||| Sbjct 5033460 AATCCGGCGATGCGTCCAGCATCTTTTGTTGCTGTTCTCTGTGAGTCATTGAAGTATGCC 5033401 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 |||||||||| || || | ||| Sbjct 5033400 GGAACAGTAACCACTGCCTTTGT 5033378 >seq5 Length=20131956 Score = 89.7 bits (98), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || || || |||| ||||||| ||| | | |||| |||| | | || |||| Sbjct 7981484 GTGCCTCCTCCCAGGTCAAAAACAAGAA---TGGTTTCGTTGTTCT---TCTTCTCAAAC 7981537 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| || || | || ||||| || ||||| || |||| | ||| | | ||||||| Sbjct 7981538 CCATATGCCAATGATGCGGCAGTGGGCTCATTTATGATTCGGAGAACTTCCAAACCAGCA 7981597 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || |||||||| || ||| ||||| || || |||||||||||||| || || Sbjct 7981598 ATCCGGCCAGCATCTTTTGTTGCTGTCCTTTGCGAGTCATTAAAATATGCAGGGACTGTG 7981657 Query 282464 ATAACGGCATCTGTTACTT 282482 || || || | ||| |||| Sbjct 7981658 ATCACTGCCTTTGTGACTT 7981676 >seq9 Length=14105664 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||| ||||| || |||||||| ||||| |||| || | ||||||||| Sbjct 10804105 CCATATGACAGAGCTGCAGCCGTGGGTTCATTGATAATCCTCATCACCTCTAGACCAGCA 10804164 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || ||||| || || || || | || | ||| || ||||| || || || || Sbjct 10804165 ATTCTACCAGCATCCTTGGTAGCCTGGCGCTGAGCATCATTGAAATAAGCTGGGACTGTG 10804224 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 ||||| || | | || ||| |||| ||||| ||| |||| ||||| || Sbjct 10804225 ATAACAGCCTTGGAGACAGTTTTGCCAAGGTAAGCCTCTGCAGTTTCCTTCATCTT 10804280 >seq8 Length=18224760 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 |||||||||||||| | |||| |||| | |||||| | ||| |||| ||| | || || Sbjct 2256686 GAATTTTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAGACC 2256627 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 |||| ||||| ||||| || | |||||| ||| | |||||||||| | Sbjct 2256626 TCTGAGACTGGATATATCCAGCGGCGACTTGTGAAGGCTATGGAAGATATTATGGTGAAG 2256567 Query 435253 TATGATGGTACAGTGAGAAA 435272 ||||||||||| |||||||| Sbjct 2256566 TATGATGGTACTGTGAGAAA 2256547 Score = 86.0 bits (94), Expect = 5e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 432263 TAAATCAATGTCTGAAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGG 432322 ||||||||| | ||| ||| || || ||||| |||||||||||||| |||||||| Sbjct 2258631 TAAATCAATTTGCAGCAGACTGAAAGCAAAGGAAGGCCGTATTAGAGGAAACTTGATGGG 2258572 Query 432323 AAAGCGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCTAATATT 432374 |||||||| ||| | || || ||||| || || || | ||||| |||||| Sbjct 2258571 GAAGCGTGTTGATTTCTCAGCTCGTACTGTCATAACACCAGATCCAAATATT 2258520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740508102426966