Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 seq4 118 2e-21 seq6 107 4e-18 seq5 100 6e-16 >seq2 Length=27082872 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || ||||| || ||||| || ||||| |||| Sbjct 2373064 TACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCAG 2373123 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | || || || || || || || ||||||||||| || | || || || || | Sbjct 2373124 CAAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGG 2373183 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || |||||||| || || ||||| || || ||||| || || ||||| | || | || Sbjct 2373184 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATC-TGAGCTCTCA 2373242 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| ||| |||||||||||||| | ||||| ||||| |||||||| Sbjct 2373243 ACCTCCAGAGTGATCGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 2373292 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || | ||| || || ||||| ||||| || || || |||| Sbjct 2373522 CCTCCCCTGAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCA 2373581 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || || || || || || ||||||||||| || | || || || ||||| Sbjct 2373582 AGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGG 2373641 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || ||||| || ||| || ||| || Sbjct 2373642 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAAGATTCCACC 2373701 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 2373702 TCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAGATCTGCAT 2373748 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || ||||| || ||||| |||| Sbjct 2373292 TACCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAG 2373351 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | || || || || || || || ||||||||||| || | || || || || | Sbjct 2373352 CAAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGG 2373411 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| || || || ||| || || | Sbjct 2373412 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCA 2373471 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| ||||| || || |||||||| Sbjct 2373472 CCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2373520 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || ||||| || ||||| || || || || | || | | || Sbjct 2372849 ACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCC 2372908 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || || ||||| || | || || ||||| || || || ||||| Sbjct 2372909 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATCCCCTCCTT 2372968 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| || || ||||| ||||| || || || | || ||||||||||| | Sbjct 2372969 GTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCG-AGCTCTCAACTTCCAAAGTGA 2373027 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||| ||||| ||||| |||||||| Sbjct 2373028 TGGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 2373064 >seq4 Length=21479432 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||||| || ||||| ||||| || ||||| || | || | | || Sbjct 18578397 CGGAGGACAAGGTGCAAGGTGGATTCCTTCTGGATGTTATAGTCTGCAAGTGTACGCCCA 18578338 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || || || || | || || |||||||| ||||| ||||| Sbjct 18578337 TCCTCAAGCTGCTTGCCGGCGAATATAAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTG 18578278 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||||||||| | || || ||||| || || Sbjct 18578277 TCCTGGATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCGACCTCCAAGGTGATG 18578218 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||||||||| Sbjct 18578217 GTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 18578183 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||||| || || || ||||| || ||||| || | || | | || Sbjct 18578625 CGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCA 18578566 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || ||||| ||||| Sbjct 18578565 TCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTG 18578506 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || || || | || || || | || || Sbjct 18578505 TCCTGGATCTTGGCCTTCACATTGTCTATTGTGTCTGACGACTCGACCTCTAGGGTAATT 18578446 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 18578445 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 18578411 >seq6 Length=21794218 Score = 107 bits (118), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| ||||| || ||||| ||||||||||| || || | | || Sbjct 19269426 CGGAGCACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCTGAGAGGAGGCGGCCA 19269485 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| || |||||||| | | || | ||| || || || || ||||| Sbjct 19269486 TCCTCAAGCTGTTTCCCGGCAAAGATCAAGCGCTGCTCATCCGGTGGAATGCCCTCCTTG 19269545 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTAT 82774 || || || || || || ||||| ||||| ||||| | ||| || || || | || || Sbjct 19269546 TCCTGGATTTTGGCCTTGACATTATCAATAGTATC-TGAGGACTCAACCTCAAGGGTGAT 19269604 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||| ||||| |||||||| Sbjct 19269605 GGTTTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 19269640 >seq5 Length=20131956 Score = 100 bits (110), Expect = 6e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || || | || || || | ||| || || || || ||||| ||||| || || | Sbjct 16284690 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGC 16284631 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || || || || ||||| || | || || || ||||| Sbjct 16284630 AAGGGTGCGGCCATCGTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGAGG 16284571 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || |||||||| || || ||||| || || || || || || || || || | || | Sbjct 16284570 GATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCGG-AGCTCTCAA 16284512 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || ||||||||||| | ||||| ||||| |||||||| Sbjct 16284511 CCTCCAGAGTAATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 16284463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981795864064449