Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 84.2 1e-11 seq6 84.2 1e-11 seq5 82.4 5e-11 seq2 82.4 5e-11 >seq9 Length=14105664 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||| || | ||||||||| | || ||| Sbjct 7866233 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGTGTGCGTCCATCCTCC 7866174 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || || || || || || |||||||||||||||||| | || | || || ||||| Sbjct 7866173 AACTGCTTGCCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCCTCCTTGTC 7866118 >seq6 Length=21794218 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || ||| || || ||||||||||| | | ||||||| | || ||| Sbjct 18102159 ACCAAATGGAGCGTTGACTCCTTCTGAATGTTGTAATCAGCTAATGTGCGTCCATCTTCC 18102100 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | ||| || || |||||||||| | ||||||||| | || | ||| |||||||| Sbjct 18102099 AGTTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGAATACCCTCTTTGTC 18102044 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| || ||| ||| || || ||||||||||| | || || || | || || Sbjct 19646836 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGCCCATCCTC 19646777 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || |||||||| |||| ||||||||| || | || | ||| || ||||| Sbjct 19646776 AAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 19646717 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || ||| || | ||| | ||||| || || || || | ||||| || | Sbjct 19646716 GATCTTGGCCTTC-ACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAAGGTGATGGTCT 19646658 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||||||||||||| Sbjct 19646657 TGCCAGTAAGGGTCTTGACAAAGATCTGCATA 19646626 >seq5 Length=20131956 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| || || ||| ||| || || || ||||| |||| Sbjct 16284690 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGC 16284631 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | ||||||| || || ||||| || |||| |||||||| || | || Sbjct 16284630 AAGGGTGCGGCCATCGTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGAGG 16284571 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || ||| |||| | | ||| | ||||||| || | Sbjct 16284570 GATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTCAA 16284512 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || ||||| | || || |||||||||||||| Sbjct 16284511 CCTCCAGAGTAATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 16284463 >seq2 Length=27082872 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || |||||||| |||| Sbjct 2372837 ACCACCACGGAGACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2372896 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||| || || ||||| || |||| ||||||||| ||| | || Sbjct 2372897 GAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 2372956 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT-TCC 33699 | || || ||||| || || |||| ||| ||| |||||| | | | || Sbjct 2372957 GATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTATCAATGGTGTC-CGAGCTCTCA 2373014 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || || || || || || || ||||||||||||||| Sbjct 2373015 ACTTCCAAAGTGATGGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATA 2373065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328694020854720