Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 105 2e-17 seq5 102 2e-16 seq4 102 2e-16 seq3 86.0 1e-11 seq1 84.2 5e-11 >seq2 Length=27082872 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || |||||||||||||| || || || ||| Sbjct 2373061 CAGATCTTTGTGAAGACATTGACTGGGAAGACCATCACTTTGGAAGTTGAGAGCTCGGAC 2373002 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 2373001 ACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCAGCAG 2372942 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 2372941 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCCGACTACAACATC 2372882 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| |||||||| || Sbjct 2372881 CAGAAGGAGTCTACCCTTCACCTGGT 2372856 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| ||||||||| | || Sbjct 2373961 AAGACTCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCTGACACCATTGACAAC 2373902 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||| || | || |||||| Sbjct 2373901 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGTCTCATCTTC 2373842 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| ||||| |||| || |||||| ||||||| ||||| Sbjct 2373841 GCTGGCAAGCAGCTGGAGGATGGCAGGACCCTGGCTGACTACAACATCCAGAAGGAGTCG 2373782 Query 206365 ACTCTTCACCTTGTT 206379 || |||||||||||| Sbjct 2373781 ACCCTTCACCTTGTT 2373767 Score = 98.7 bits (108), Expect = 2e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 |||||||||||| || ||||| ||||||| || |||||||||| ||||| ||||| || Sbjct 2373767 AACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTCCTGCCATCCTC 2373826 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||| || |||||||| || || || ||| Sbjct 2373827 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGA 2373860 >seq5 Length=20131956 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || |||||||| || || || ||| |||| || || || || ||| Sbjct 16284466 CAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGAC 16284525 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || || ||| || Sbjct 16284526 ACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAG 16284585 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| ||||| | Sbjct 16284586 CGGCTGATCTTCGCCGGCAAGCAGCTGGACGATGGCCGCACCCTTGCCGACTACAATATT 16284645 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 16284646 CAGAAGGAGTCCACCCTCCACCTGGT 16284671 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 2691793 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 2691852 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 2691853 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTC 2691912 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 2691913 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 2691972 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2691973 ACCCTCCACCTGGT 2691986 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || ||||| || ||||| | || ||||| || || Sbjct 16284010 CAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTTGAGGTGGAGTCCTCCGAT 16284069 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || ||| |||||| || Sbjct 16284070 ACCATTGACAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 16284129 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| || ||| | || || || ||||| | || || |||||| || Sbjct 16284130 CGTCTGATCTTTGCCGGCAAACAGCTCGAGGACGGCAGGACCCTAGCTGACTACAACATC 16284189 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 16284190 CAGAAGGAGTCCACCCTTCACCTTGT 16284215 >seq4 Length=21479432 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| ||||| || || || ||||| |||| Sbjct 18579093 AAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGTCATCGGACACCATCGACAAC 18579152 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || | || |||||| Sbjct 18579153 GTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGCCTCATCTTC 18579212 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || | ||||| || ||| ||||||| ||||| Sbjct 18579213 GCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCG 18579272 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||| || | || || Sbjct 18579273 ACCCTGCACCTTGTTCTGCGCCTCCG 18579298 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| ||||| || || || ||||| |||| Sbjct 18578654 AAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCATCGGACACCATCGACAAC 18578713 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || | || |||||| Sbjct 18578714 GTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGCCTCATCTTC 18578773 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | || || || ||| ||||||| ||||| Sbjct 18578774 GCCGGCAAGCAGCTCGAGGATGGTCGCACCCTTGCTGACTATAACATCCAGAAGGAGTCC 18578833 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 18578834 ACCCTGCACCTTGT 18578847 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || ||||||||| || || ||||| ||||||| |||||||| || | || Sbjct 18579298 CGGAGGCGCAGAACAAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGCAAGGGTG 18579239 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| ||||||||||| ||||||||||| || || || || Sbjct 18579238 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTG 18579195 >seq3 Length=29620734 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || |||||||||| || | ||||| ||| Sbjct 6260176 ACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCC 6260235 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| ||||| || || Sbjct 6260236 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTG 6260267 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||| | || |||||||||| || | |||||| ||| Sbjct 6260752 ACGAGGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCAGCCAGGGTGCGTCCATCCTCC 6260811 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| ||||| || || Sbjct 6260812 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTG 6260843 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || |||||||||| || | ||||| ||| Sbjct 6271937 ACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCC 6271996 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| ||||| || || Sbjct 6271997 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTG 6272028 >seq1 Length=33916305 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 9799461 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 9799402 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 9799401 GTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCCTCATCTTC 9799342 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 9799341 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 9799282 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 9799281 ACCCTCCACCTGGT 9799268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181783081081211