Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq2451 187 6e-42 >seq2451 Length=202 Score = 187 bits (206), Expect = 6e-42 Identities = 165/204 (81%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 336429 TTGTTTCCCCAACTGCACTAACCATTCTACAATCTGCTACTACTTCTAGCTTTGCACGTA 336488 ||||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| |||| Sbjct 1 TTGTTTCTCCAACTGCTCTAACTATTCTTCAGTCTGCAACTACTTCTAGTTTTGCTCGTA 60 Query 336489 CCACTGAAGGTACTTTTGAAGCACCAACTAACGTTAAGTTTGTAGGTACTCTAAACAGCA 336548 | |||||||||||||||||||| |||||||||||||| || || ||| |||||| | Sbjct 61 CTACTGAAGGTACTTTTGAAGCTCCAACTAACGTTAAATTCGTTGGTGTACTAAACTCAA 120 Query 336549 CTATGCGTATTTTCGTTGATACCTATGCTAGTGATGCAGAA--GATATTCTAATTGGTTA 336606 | |||||| | | ||||||||||||||| ||| ||| | ||| | ||||| ||||| Sbjct 121 CCATGCGTGTATATGTTGATACCTATGCTGATGA--CAGTACTGATGTACTAATCGGTTA 178 Query 336607 TAAAGGAAATGCGGAAACTGATGC 336630 ||||| ||| ||||||||||| Sbjct 179 CAAAGGTAATCAAGAAACTGATGC 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115135608265679