Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 1e-15 seq1 93.3 1e-14 seq6 80.6 8e-11 >seq8 Length=18224760 Score = 96.9 bits (106), Expect = 1e-15 Identities = 116/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAAC-AATGGTCG 20391 ||||| || || || ||||| ||||| || ||||| | || | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 20392 TGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCA 20451 ||| || ||||||||||||| || |||| | ||||||||| || || || ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 20452 TGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||| |||||||| |||||||| || ||||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 >seq1 Length=33916305 Score = 93.3 bits (102), Expect = 1e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||| ||||| || ||||||||||| || | || || || ||| | ||||||||| ||| Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 8033810 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || ||||||| |||||||| || || | | ||||| | | ||||| |||||| Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTAT-TTTCTTGATTTACCCTATTGGTC 8033751 Query 19950 AGGGTAGCTTCTCCGATGCTATG 19972 | || || ||||| |||| |||| Sbjct 8033750 AAGGAAGTTTCTCTGATGGTATG 8033728 >seq6 Length=21794218 Score = 80.6 bits (88), Expect = 8e-11 Identities = 90/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 20192 TATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTC 20251 |||| || || |||||||||||||| ||||| | || |||||| | || ||| || Sbjct 13078199 TATATTATTGTGGCCGCTCATGGTTATTTTGGCTGATTAATCTTC-AGTATGCTAGCTTT 13078257 Query 20252 AACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 20310 ||||| ||||||| ||||||||||| | | || || | || |||||||||||||| Sbjct 13078258 AACAACTCCCGTTCTTTACACTTCTTCTTGACCGCTTGATCAGTAGTAGGGATTTGGTT 13078316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148824397551078