Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 1e-15 seq6 80.6 8e-11 >seq8 Length=18224760 Score = 96.9 bits (106), Expect = 1e-15 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 29461 ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAAC-AATGGTCG 29519 ||||| || || || ||||| || || || ||||| | || | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 29520 TGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCA 29579 ||| || ||||||||||||||| | |||| | ||||| || || ||||||||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 29580 TGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCTAC 29618 || ||||||||||| |||||||| || || || ||||| Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTAC 4907343 >seq6 Length=21794218 Score = 80.6 bits (88), Expect = 8e-11 Identities = 91/121 (75%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 29318 CTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTT 29377 |||||| || || |||||||| ||||| ||||| | || |||||| | |||||| | Sbjct 13078197 CTTATATTATTGTGGCCGCTCATGGTTATTTTGGCTGATTAATCTTC-AGTATGCTAGCT 13078255 Query 29378 TCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGT 29437 | || || ||||||| ||||||||||| | | || || | || ||||||||||||| Sbjct 13078256 TTAACAACTCCCGTTCTTTACACTTCTTCTTGACCGCTTGATCAGTAGTAGGGATTTGGT 13078315 Query 29438 T 29438 | Sbjct 13078316 T 13078316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146661261539886