Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 >seq6 Length=21794218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| | ||||||||| |||||||| ||| || ||| ||| ||||||| | Sbjct 6279010 AAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCT 6278955 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || || |||||| || |||||| || | Sbjct 6278954 CGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTG 6278895 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| ||||||||||||| |||||| |||||| | ||||| ||||| Sbjct 6278894 GCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGA 6278835 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| ||||| || || ||| Sbjct 6278834 CGAGGGCCTGCACTGCGACTTCGCCTGCCTC 6278804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596359518760