Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq7 104 3e-17 seq1 102 9e-17 seq8 96.9 4e-15 seq3 95.1 1e-14 >seq7 Length=18603524 Score = 104 bits (114), Expect = 3e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 159716 TACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTC 159774 |||| ||| ||||| ||||||| ||| ||| | | ||||| ||||| ||| | ||| Sbjct 9543596 TACGTCAAATTGAACTTGCTCGGTCT-GTTCAATTGTGGCCTTATAATGCAATTTCATTC 9543654 Query 159775 TCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCA 159834 ||||| || || ||||||||||| ||||||||| || ||||||||||| || || Sbjct 9543655 TCTGGCCCAATCGCTGTTTTTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGC 9543714 Query 159835 TGGTTCTTTGCACCTAGTTTCGGGGT 159860 ||||||||||| || ||||| || || Sbjct 9543715 TGGTTCTTTGCGCCGAGTTTTGGCGT 9543740 >seq1 Length=33916305 Score = 102 bits (112), Expect = 9e-17 Identities = 186/265 (70%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 159673 TTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATT 159732 ||| |||||||| | || | || || || ||| ||| ||| ||| ||||||||| || Sbjct 14419130 TTTTTTGCTCTC-ATGGGGATTTTGCACTAATATGTTGCATGTTACATCAATTTGAACTT 14419072 Query 159733 GCTC-GTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 159791 |||| |||| ||| | | |||| ||||| ||| |||||| |||||| | | | | Sbjct 14419071 GCTCAGTCT-GTTCAATTTCAACCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTAT 14419013 Query 159792 TTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAG 159851 || ||| |||||||| || ||||||| || || | |||||||||||||| | Sbjct 14419012 TTGTGTTTCCGTATTCCCGATTGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAAA 14418953 Query 159852 TTTCGGGGTAGCA--GCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGG 159909 ||| || |||||| | ||||| ||||| | ||| | || | || || |||||| Sbjct 14418952 TTTTGGCGTAGCAATGGTATCTT--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTGG 14418895 Query 159910 ACCCT-CAACCCCTTCCATATGATG 159933 || | ||||| || ||||||||| Sbjct 14418894 ACATTATAACCCATTTCATATGATG 14418870 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 |||||||| |||||||||||||| || |||| | |||||||| || ||||| ||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 ||||||||||||| || || || || | | | | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 158123 GGTTCTTTCTCCGATGCTATG 158143 || |||||| |||| |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATG 8033728 >seq8 Length=18224760 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 158503 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTC 158561 |||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTC 4907443 Query 158562 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 158621 ||| | || || ||||| ||| | | |||| ||| |||||||| |||||| |||| Sbjct 4907442 ATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGC 4907383 Query 158622 ATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158662 | || ||||| || ||||||||||| || || || ||| || Sbjct 4907382 ACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 159802 GTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTA 159861 |||||||| || |||||| ||| || ||| |||||||||| || ||||| || || Sbjct 15457057 GTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGAGT- 15456999 Query 159862 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCC 159921 |||||||| ||| ||| | | | ||| | || || || ||||| |||| | || || Sbjct 15456998 GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAGTTAAATCCA 15456939 Query 159922 TTCCATATGATGGGAGTT 159939 || ||||||||||||||| Sbjct 15456938 TTTCATATGATGGGAGTT 15456921 >seq3 Length=29620734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 159803 TATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAG 159862 ||||||| || ||||||||||| || || | ||||||| || ||||| ||||| Sbjct 22064862 TATTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAG 22064921 Query 159863 CAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCT 159922 |||| || ||| | ||| | | || | || | || ||||| ||||| ||||| | Sbjct 22064922 CAGCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCAT 22064981 Query 159923 TCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTG 159982 | |||||||||||||||||||| || |||||| || ||| | ||| || | || | Sbjct 22064982 TTCATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTATTCGTGAGG 22065041 Query 159983 CTACTGT 159989 | ||||| Sbjct 22065042 CAACTGT 22065048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573006157465200