Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq8 113 5e-20 seq1 93.3 5e-14 seq3 89.7 6e-13 >seq8 Length=18224760 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 160761 TGGTTCACT----GCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTT 160816 ||||||||| ||| | ||| |||| | |||||| |||||||| ||||| ||||| || Sbjct 4907529 TGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATTCAATTT 4907470 Query 160817 CAACCAGTCCATCCTCGATGGTCAA-GGTCGTGTACTGAACACCTGGGCAGACGTACTGA 160875 |||||| | | | | | | ||| |||| ||| | || || ||||| || | | | Sbjct 4907469 CAACCAAT---TTGTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATATCATCA 4907413 Query 160876 ATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCG 160935 | | |||| |||||||| |||||| ||||| || ||||| || ||||||||||| || | Sbjct 4907412 ACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAG 4907353 Query 160936 ACCTCGCTGCT 160946 |||| ||| || Sbjct 4907352 ACCTAGCTACT 4907342 >seq1 Length=33916305 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 |||||||| |||||||||||||| | |||| | |||||||| || ||||| ||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 ||||||||||||| || || || || || || | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 160407 GGTTCTTTCTCCGATGCTATG 160427 || |||||| |||| |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATG 8033728 >seq3 Length=29620734 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 162114 TTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCA 162173 ||||| || || ||| |||| || ||| | | || || | || ||| ||| ||| Sbjct 22064864 TTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAGCA 22064923 Query 162174 GCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTC 162233 || || ||| | ||| | | ||| | |||| ||| || || ||||| |||||| || Sbjct 22064924 GCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCATTT 22064983 Query 162234 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||||||||||||||||||| || |||||| || || ||| |||||||| Sbjct 22064984 CATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTATTC 22065035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559486578444200