Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 4e-15 seq3 82.4 8e-11 >seq8 Length=18224760 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 159206 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTC 159264 |||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTC 4907443 Query 159265 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGC 159324 ||| | || || ||||| ||| | | |||| ||| ||| |||| |||||| |||| Sbjct 4907442 ATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGC 4907383 Query 159325 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365 | || ||||| || ||||||||||| || ||||| ||| || Sbjct 4907382 ACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 160322 GTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTG 160381 |||||||| || | ||| ||| || || ||||||| || | ||| ||||| ||| Sbjct 15457057 GTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGAGTG 15456998 Query 160382 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCC 160441 ||||||| ||| ||| | | | ||| | |||||||||||||| |||| | | || || Sbjct 15456997 -CAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAGTTAAATCCA 15456939 Query 160442 TTCCATATGATGGGAGTT 160459 || ||||||||||||||| Sbjct 15456938 TTTCATATGATGGGAGTT 15456921 >seq3 Length=29620734 Score = 82.4 bits (90), Expect = 8e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 160323 TATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGG 160382 ||||||| || || ||| |||| || ||| | | || || | || ||| ||| | Sbjct 22064862 TATTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAG 22064921 Query 160383 CAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCT 160442 |||| || ||| | ||| | | || | |||| ||||||||| ||||| ||||| | Sbjct 22064922 CAGCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCAT 22064981 Query 160443 TCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCT 160485 | |||||||||||||||||||| || |||| | || ||||| Sbjct 22064982 TTCATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCT 22065024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552456397353280