Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq1 105 8e-18 seq7 95.1 1e-14 seq8 84.2 3e-11 >seq3 Length=29620734 Score = 107 bits (118), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 180445 TATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAG 180504 |||| || || || |||||||| || ||| | | ||||||| || |||| ||||| Sbjct 22064862 TATTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAG 22064921 Query 180505 CAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCT 180564 |||| || ||| | ||| | |||||| | || | || ||||| ||||| ||||| | Sbjct 22064922 CAGCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCAT 22064981 Query 180565 TCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCG 180624 | |||||||||||||||||||| || |||||| || ||||| || || | || | Sbjct 22064982 TTCATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTATTCGTGAGG 22065041 Query 180625 TAACTGTGGAGAACACACTGT 180645 ||||||| | || |||| || Sbjct 22065042 CAACTGTGCA-AAAACACCGT 22065061 >seq1 Length=33916305 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 179188 TATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 179247 |||||||| |||||||||||||| || |||||| ||||||||||| ||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 179248 GCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 179307 ||||| ||||| | || || ||||| | | | | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 179308 GGTTCTTTCTCTGATGCTATG 179328 || ||||||||||| |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATG 8033728 >seq7 Length=18603524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 180396 CCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATC 180455 ||||| ||||| ||| |||||||||| || |||||||| ||||| |||||| || || Sbjct 9543634 CCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTCCTGATT 9543693 Query 180456 TACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGT 180502 || |||||||| || ||| | ||||||||||| || |||||| || Sbjct 9543694 TATCCACTGGGGCAATCCGGCTGGTTCTTTGCGCCGAGTTTTGGCGT 9543740 >seq8 Length=18224760 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/160 (72%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 179688 CATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACG 179747 |||||| |||||||| ||||| ||||| |||||||| | | || | |||| | Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATTTGTAGTTAGCCA--AAGGTCA 4907442 Query 179748 TGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 179807 ||| | || || ||||| || | | |||| ||| | | |||| |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 179808 TGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 179847 || ||||| || ||||||||||| || ||||| ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 180444 GTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTA 180503 ||||| || || | |||| ||| || || |||||||||||| || |||||| || Sbjct 15457057 GTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGAGT- 15456999 Query 180504 GCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCC 180563 |||||||| ||| ||| | | ||||| | || || || ||||| |||| | || || Sbjct 15456998 GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAGTTAAATCCA 15456939 Query 180564 TTCCATATGATGGGAGTT 180581 || ||||||||||||||| Sbjct 15456938 TTTCATATGATGGGAGTT 15456921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610310595862080