Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 seq2 87.8 2e-12 >seq6 Length=21794218 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 2575441 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 2575382 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | ||||||||||| ||||| || || | || | |||||| || || Sbjct 2575381 ATTGGAGGTTCCATTTGTTCCTCGGATATAGCTCCCGGTAGCTCTAATATTGTGAACTGA 2575322 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| |||||||| || ||| || | |||||| ||||| || ||||| || Sbjct 2575321 TACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAAAT 2575262 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 2575261 TCCCTCGATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2575220 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 6278807 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAG 6278866 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || |||||||| || ||||| || ||||| || ||||| ||| || || || || |||| Sbjct 6278867 GCCCGGCATTAGGCCGCGCTTCTTTAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 6278925 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||||||| || || || || ||||| || | ||| Sbjct 6278926 AGATGCCCTCGACACAGGCGAAGGCAACGAGGCGCTC 6278962 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 907388 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 907329 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 907328 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 907270 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 907269 AGATCCCCTCGAC 907257 >seq2 Length=27082872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 69094 TCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCT 69153 |||||||| |||||||| ||||| || || || || || ||| ||||||| || | || Sbjct 25697205 TCTGCCAAGCCCTGAACACCAATTCCAATTGGCCTGTGCCTCATATTTGATCTCTTTGCA 25697146 Query 69154 -TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC 69199 ||| || ||||||||||||| |||| || |||||||| ||||||| Sbjct 25697145 GTCTC-AACAGGATAATAATTAGTATCAATTATTTTATTGAGATTTC 25697100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686887411377240