Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq2451 172 1e-37 >seq2451 Length=202 Score = 172 bits (190), Expect = 1e-37 Identities = 164/206 (80%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 295441 GCATCAGTTTCAGCATTACCTTTATAACCAATCA--AAAT--GTCCTCGGCATCTGAAGC 295496 ||||||||||| ||||||||| ||||| || | | || || || | |||| ||| Sbjct 202 GCATCAGTTTCTTGATTACCTTTGTAACCGATTAGTACATCAGTACT-GTCATC---AGC 147 Query 295497 ATACGTATCAACAAAAATACGCATAGTGCTGTTTAGAGTACCTACAAACTTAACGTTAGT 295556 ||| ||||||||| | | |||||| || |||||| ||| || || ||||||||||| Sbjct 146 ATAGGTATCAACATATACACGCATGGTTGAGTTTAGTACACCAACGAATTTAACGTTAGT 87 Query 295557 TGGTGCTTCGAAAGTACCTTCAGTGGTACGTGCAAAGCTAGAAGTAGTAGCAGATTGTAG 295616 ||| ||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| || || Sbjct 86 TGGAGCTTCAAAAGTACCTTCAGTAGTACGAGCAAAACTAGAAGTAGTTGCAGACTGAAG 27 Query 295617 AATGGTTAGTGCAGTTGGGGAAACAA 295642 ||| ||||| |||||||| ||||||| Sbjct 26 AATAGTTAGAGCAGTTGGAGAAACAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113794851058568