Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 102 7e-17 seq5 93.3 4e-14 seq2 91.5 1e-13 seq4 84.2 2e-11 >seq6 Length=21794218 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| || | |||| | || || ||||| || || Sbjct 19646139 GTAGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 19646080 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 19646079 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 19646020 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| ||||| ||| Sbjct 19646019 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTT 19645960 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || ||||| |||||| || Sbjct 19645959 TTGACGAAGATCTGCATACCT 19645939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || || Sbjct 19646367 GTGGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 19646308 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 19646307 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 19646248 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| || || || || ||||| || | || || ||||| || Sbjct 19646247 ACGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGAGTGATGGTCTTTCCGGTCAGGGTC 19646188 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 19646187 TTGACGAAGATCTGCAT 19646171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || |||| | || |||||||| || ||| Sbjct 19646595 GTGGATTCCTTCTGTATGTTGTAGTCAGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCG 19646536 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | |||||| || || ||||||| ||| Sbjct 19646535 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 19646476 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 19646475 ACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCAGTAAGGGTC 19646416 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 19646415 TTGACGAAGATCTGCAT 19646399 >seq5 Length=20131956 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||| || | || || || || ||||| |||||||| Sbjct 16284007 TGCCTCCCCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 16283948 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | | | || |||||||| || || ||| | |||||||| || || || || | Sbjct 16283947 CCAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGGG 16283888 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | || |||| Sbjct 16283887 GGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCAA 16283828 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||| | ||||| || || || ||||||||||| ||||| Sbjct 16283827 CCTCAAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 16283779 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||||||| | | |||| | || || ||||| || ||| Sbjct 16284659 GTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGGCCATCGTCCAGCTGCTTGCCG 16284600 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || || || || | || || || || |||||| ||| Sbjct 16284599 GCGAAGATCAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTC 16284540 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || ||||| || | ||||| || ||||| Sbjct 16284539 ACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCTGTGAGAGTC 16284480 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 16284479 TTGACAAAGATCTGCAT 16284463 >seq2 Length=27082872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || |||||||| | | | | |||| || ||||| || ||| Sbjct 2374008 GTTGACTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCG 2374067 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| |||||||| || | ||||| || || |||||| || Sbjct 2374068 GCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 2374127 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || |||| ||||| ||||| || Sbjct 2374128 ACGTTATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGTGTC 2374187 Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAAA 27259 ||||||||||| ||||| |||| | ||| Sbjct 2374188 TTCACAAAGATCTGCAT--CTGCAAGAAA 2374214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | | | || | || || ||||| || ||| Sbjct 2372868 GTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCCTCCAGCTGCTTGCCG 2372927 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || || || | ||||| || || ||||||| ||| Sbjct 2372928 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 2372987 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||||| | ||| || | || || |||| || Sbjct 2372988 ACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAAGTGATGGTCTTCCCAGTCAATGTC 2373047 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 2373048 TTCACAAAGATCTGCATA 2373065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | | | | || || ||||| || || Sbjct 2373780 GTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCCAGCTGCTTGCCA 2373839 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| |||||||| || | ||||| || || ||||||| || Sbjct 2373840 GCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 2373899 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || |||| ||||| |||||||| Sbjct 2373900 ACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTC 2373959 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 2373960 TTTACGAAGATCTGCAT 2373976 >seq4 Length=21479432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | || || || || || || || || || ||||| Sbjct 18578639 TGCCTCCACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCTG 18578580 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | || |||||||| || || || | ||||||||||| || || || | Sbjct 18578579 CAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTG 18578520 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| |||| | |||| ||||||| | || | Sbjct 18578519 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCTATTGTGTCTGACGACTCGA 18578460 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || | ||||| || || || ||||| ||||| ||||| Sbjct 18578459 CCTCTAGGGTAATTGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 18578411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424921499389992