Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 7e-11 >seq6 Length=21794218 Score = 84.2 bits (92), Expect = 7e-11 Identities = 126/175 (72%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGC-TGTGGTCGAAGGACTGTTGTTTAGCGGCAGC 443756 |||||| |||||| || || || || || |||| |||| || | || || ||| | Sbjct 6278970 GCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGTG-TCGAGGGCATCTTCTTCTCGGGCTCC 6278912 Query 443757 TTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAA 443816 || || ||||||||||| | || ||||| || || |||| || || || || || Sbjct 6278911 TTCTGCG-CCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAA 6278853 Query 443817 CGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 ||| || ||| || |||||||| |||| |||||||||||||| || |||||| Sbjct 6278852 CGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC 6278798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588285306767495