Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=21794218 Score = 123 bits (136), Expect = 3e-23 Identities = 200/287 (70%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | ||| ||| |||||||| | | || ||||| ||| Sbjct 19066372 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCTCTGTTGGTGGCAGCA 19066431 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || ||||| ||||| | Sbjct 19066432 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 19066491 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| | ||| | |||| | || Sbjct 19066492 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTTCCA 19066545 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || || || || || ||| || ||| | | || Sbjct 19066546 ACAGCATCTATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 19066605 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| ||||| ||||||||||||||||| Sbjct 19066606 AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAA 19066652 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 907373 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 907314 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 907313 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 907254 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 907253 GGCGAAGGCGACGAGGCGCTCGGCGAAG 907226 Score = 113 bits (124), Expect = 6e-20 Identities = 306/457 (67%), Gaps = 20/457 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 6278523 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 6278582 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| ||||| || |||| | || | ||| |||| | |||||| || Sbjct 6278583 CAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGCAGCCCAGGGCCAT-GAGGAGGCG 6278641 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||| | ||| || |||||| |||| ||| | || Sbjct 6278642 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 6278701 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | |||| || || || || || ||||| || Sbjct 6278702 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCAACGATCTCGC 6278760 Query 122609 GGATAGTTTCGG---TAGTGGGTCTATTACGCAAAG----TCTT-GAAGAGCTCCACGGC 122660 ||| ||| | || | || | ||| || || | || ||| || ||| Sbjct 6278761 GGACG----CGGACCTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 6278812 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 || || ||| || ||||| || ||||| || || || || ||||| || || || Sbjct 6278813 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGG 6278872 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780 ||| || || |||||||| | ||| | || |||||||| || || ||||||||||| || Sbjct 6278873 CATTAGGCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 6278932 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 ||| ||||| || || |||| ||||| ||||||||| Sbjct 6278933 CTCGACACAGGCGAAGGCAACGAGGCGCTCGGCGAAG 6278969 Score = 86.0 bits (94), Expect = 8e-12 Identities = 211/318 (66%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || || | || || || || || || |||||||| ||| | Sbjct 21503683 CAAATCCATCCATCTCCGTCAGGAGCTGGTTGATGGTCTGCTCCCTCTCATCGTTTCC-- 21503740 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 || | | | || |||| || ||| | || || || || |||||||| ||||| ||||| Sbjct 21503741 GCCTCCGAGCCCCGCACCACGCTGCCTCCCGACGGCGTCGATCTCATCGATGAACACAAT 21503800 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| || || ||||| Sbjct 21503801 GCAAGGCGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTCACCCTGGACGCGCCGACACC 21503860 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || || | ||| || || | | ||| | ||| || ||| || || | || || Sbjct 21503861 GACGAAGAGCTCGACGAACTCCGAGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCC 21503920 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 |||| ||| || || || || ||||| ||||| || ||| || |||| ||| || Sbjct 21503921 GGCGACGGCACGCGCCAGCAGCGTCTTCCCCGTGCCGGGCGGGCCAACGAGGAGGCATCC 21503980 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 21503981 CTTGGGGATCTTGGCCCC 21503998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012444653600