Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 159 4e-34 >seq6 Length=21794218 Score = 159 bits (176), Expect = 4e-34 Identities = 316/454 (70%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 6278523 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 6278582 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || |||||||| ||| | || | || ||| ||| | |||||| || Sbjct 6278583 CAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGCAGCCCAGGGCCAT-GAGGAGGCG 6278641 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | || Sbjct 6278642 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 6278701 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| ||||| || || || ||||| || Sbjct 6278702 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCAACGATCTCGC 6278760 Query 129966 GAATG--GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | | | ||| | || | | ||| | | ||| | || ||| || ||| || Sbjct 6278761 GGACGCGGACCTCGT-CGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 6278815 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| ||||||||||| || || ||||| || || ||||| Sbjct 6278816 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGCAT 6278875 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 || || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 6278876 TAGGCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 6278935 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||| ||||| |||| ||| ||||| || ||| Sbjct 6278936 GACACAGGCGAAGGCAACGAGGCGCTCGGCGAAG 6278969 Score = 152 bits (168), Expect = 6e-32 Identities = 317/458 (69%), Gaps = 22/458 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 907672 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 907613 Query 129788 AAATCAAATGGGTT-----CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGA 129842 | || || ||||| | ||| | || || || ||| || | | |||| | Sbjct 907612 CAGTCGAACGGGTTGGCGACCTTG---TACATCTT-CTTGCAG-CCGAGCGCCATGAGCA 907558 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-G 129901 | || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | Sbjct 907557 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCG 907498 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || ||||||||||| ||| ||| || |||| ||||| || || || ||||| Sbjct 907497 CGACG-GGGAGCGCGTCGCAGACGAATTCCCTCTCGATGTCGACGGCGTCGGCGACGATC 907439 Query 129962 GCGTGAATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTTGAAGAGTTCCACGG 130016 || | | | | ||| || | || | | ||| | | ||| | || | || || Sbjct 907438 TCGCGGACGCGGGACTC-GT-CGAGCT-TGCCGCGGAGGAGGTCGTATAG-GAGGCA-GG 907384 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 | || || |||||| |||||||| ||||||||||| || || |||||| || || | Sbjct 907383 CGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 907324 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 ||||||| || |||||||| | |||||| || || || || ||||| ||||||||||||| Sbjct 907323 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCC 907264 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 |||| || || ||||| || | ||| ||||| || ||| Sbjct 907263 CCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 907226 Score = 109 bits (120), Expect = 7e-19 Identities = 271/407 (67%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 ||||| || | || || || || || ||| |||| || | ||| | ||| || || Sbjct 21503595 CGATCGAACCTCCCAGGCCGAAGAAGCGCGGCGTCCAGCACATCGGGCCTGTTTGTGGCG 21503654 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 |||| |||| || || | | | |||| ||||||||||| |||| ||| || ||| Sbjct 21503655 GCGAGCACAATGACACCACTGTTGCCGGCAAATCCATCCATCTCCGTCAGGAGCTGGTTG 21503714 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGA 14240 ||||| || || | ||||| || | || | | | ||||||| || ||| | |||| Sbjct 21503715 ATGGTCTGCTCCCTCTCATCGTTTCC--GCCTCCGAGCCCCGCACCACGCTGCCTCCCGA 21503772 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGA 14300 ||||||| || ||||||||||| || || || || || | ||| || || | Sbjct 21503773 CGGCGTCGATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTGGCCTTCTCGAACA 21503832 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 14360 || | ||| || || |||||||| || || | ||| || || | | ||||| | Sbjct 21503833 GGTCCCTCACCCTGGACGCGCCGACACCGACGAAGAGCTCGACGAACTCCGAGGCGGCGC 21503892 Query 14361 ATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 | || |||||| ||| | || || |||| ||| || || || || |||||||||| Sbjct 21503893 AGGAGAAGAAGGGCACGCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGCGTCTTCCCCG 21503952 Query 14421 TCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 | || || || |||| | |||| | | | |||||| |||| || Sbjct 21503953 TGCCGGGCGGGCCAACGAGGA-GGCATCCCTTGGGGATCTTGGCCCC 21503998 Score = 96.9 bits (106), Expect = 4e-15 Identities = 272/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077 |||| ||| || |||||||| || |||| |||| | || || || ||||| || Sbjct 5198757 ATCTCCTCCCGGCCGCGCACGTCAGGGAGGGCGACGGACACCTGCCGGTCGAAGCGGCCC 5198816 Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137 |||||||| || ||| |||| ||||| || ||||| || |||||||| || | || | Sbjct 5198817 GGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTGGTGGCCGCGATCACGATGACG 5198876 Query 14138 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 14197 || | || | || || |||||||| || | || || || | || || || | Sbjct 5198877 CCGCTGTCTCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGGTTCAGCGTCTGCTCCCTC 5198936 Query 14198 TCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255 || || ||| | || | | | |||| | ||| ||| ||||||||||| || || | Sbjct 5198937 TCGTCGTTCCC--GCCTCCGATGCCCGTGCCGCGCTGCCGCCCGACGGCGTCGATCTCGT 5198994 Query 14256 CGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCT 14315 ||||||| |||| || || || | ||| | || | || ||||| | | Sbjct 5198995 CGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAACAGGTCGCGCACCCGCG 5199054 Query 14316 TGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGG 14374 || || || || | |||||||| | || | | | ||| ||| | || ||||||| Sbjct 5199055 ACGCGCCAACGCCGATGAACATCTCGATGAACTCCGAGCCGG-ACAGCGAGAAGAAGGGG 5199113 Query 14375 ACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || || ||||| || | || || || |||||||||||||| || Sbjct 5199114 ACACCAGCCTCCCCGGCGATCGCCCTCGCCAGCAGCGTCTTCCCCGTCCCCGG 5199166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || || || | ||| | ||| || ||||||||| | ||| || || || Sbjct 19066372 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCTCTGTTGGTGGCAGCA 19066431 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || |||| ||| || || | ||||| |||||||||||||||| | ||||| | Sbjct 19066432 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 19066491 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 14245 || || || | ||||||||| || | ||| | | | |||| | || || || Sbjct 19066492 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTCCCTCTTTGCCTTCCAACAGCA 19066551 Query 14246 TCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAAAGATATC 14304 || |||||||| | || || || || || ||| | | || | ||| ||| | ||| Sbjct 19066552 TCTATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATC 19066610 Query 14305 TCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || || | |||||| ||||||||||||||||||||||| Sbjct 19066611 ACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAA 19066652 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 119414 TTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG 119473 ||| ||||| || || ||||||||||| |||||||||| || || | ||| | || Sbjct 2575132 TTGGGGCCTTGGAGTGCCAGCGTTGAAAAGAGTTGGTGAAGCATGAGTAAACCATCGCTG 2575073 Query 119474 GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 119533 |||||| | ||||| | | ||| |||||| ||| ||| || || | || Sbjct 2575072 AGACATCAGATGATAGGTTTTGATAGCGGACTCAATGTCATCCTTGTGTATTCCCACTGA 2575013 Query 119534 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 119593 || | ||| ||||||| || || |||| | | | ||| | ||| || |||||| Sbjct 2575012 AACTCTCATTAACATGTGCTGCGGCCTTTCAACAACCCTCCCACCAAGCTTCAAGAGGTA 2574953 Query 119594 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCC 119640 | | |||||| ||||||| |||||| ||| || ||||| |||||| Sbjct 2574952 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCATAATCGAAGTCCC 2574906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415943473960